Australian New Crops Info 2016
Supported by the Rural Industries Research and Development Corporation

Listing of Interesting Plants of the World:

Brachypodium distachyon

 

 

This species is usually known as:

Brachypodium distachyon, Brachypodium distachyon var. ciliatum

 

This species has also been known as:

Brachypodium distachyon var. asperum, Brachypodium distachyon f. brevisetum, Brachypodium distachyon var. brevisetum, Brachypodium distachyon f. confusum, Brachypodium distachyon var. hispidum, Brachypodium distachyon f. intermedium, Brachypodium distachyon f. mite Pamp., Brachypodium distachyon var. monostachyum, Brachypodium distachyon f. monostachyum, Brachypodium distachyon f. multiflorum, Brachypodium distachyon var. multiflorum, Brachypodium distachyon var. neglectum, Brachypodium distachyon f. paradoxum, Brachypodium distachyon var. paradoxum, Brachypodium distachyon subsp. paui, Brachypodium distachyon f. pentastachyon, Brachypodium distachyon var. pentastachyon, Brachypodium distachyon var. pentastachyum, Brachypodium distachyon var. platystachyon, Brachypodium distachyon f. platystachyum, Brachypodium distachyon var. platystachyum, Brachypodium distachyon var. pluriflorum, Brachypodium distachyon f. pseudosubtile, Brachypodium distachyon var. pubescens, Brachypodium distachyon var. pumilum, Brachypodium distachyon f. subtile, Brachypodium distachyon var. subtile, Brachypodium distachyon f. undulatifolium, Brachypodium distachyon var. undulatum, Brachypodium distachyon var. velutinum

 

Common names:

Purple False Brome

 

 

Trends (five databases) 1901-2013:
[Number of papers mentioning Brachypodium distachyon: 1204]

 

Brachypodium distachyon.jpg

 

Popularity of Brachypodium distachyon over time
[Left-hand Plot: Plot of numbers of papers mentioning Brachypodium distachyon (histogram and left hand axis scale of left-hand plot) and line of best fit, 1901 to 2013 (equation and % variation accounted for in box); Right-hand Plot: Plot of a proportional micro index, derived from numbers of papers mentioning Brachypodium distachyon as a proportion (scaled by multiplying by one million) of the approximate total number of papers available in databases for that year (frequency polygon and left-hand axis scale of right-hand plot) and line of best fit, 1901 to 2013 (equation and % variation accounted for in box)] 

[For larger charts showing the numbers of papers that have mentioned this species over years, select this link; there are links to come back from there]

 

Keywords

[Total number of keywords included in the papers that mentioned this species: 5024]

 

454 (1), Brachypodium distachyon (81), wheat (37), Arabidopsis (29), grasses (29), Internet resource (29), Brachypodium (28), evolution (26), Arabidopsis thaliana (25), rice (25), gene expression (23), genes (21), comparative genomics (18), Triticum aestivum (18), plant (17), Abiotic stress (16), genomics (16), drought (15), genome (15), metabolomics (15), Oryza sativa (15), Poaceae (15), <ARROW expressed sequence tags (14), gene duplication (14), Internet resource AgSpace (14), phylogeny (14), nucleotide sequences (13), Hordeum vulgare (12), Stress tolerance (12), transcriptome (12), Cell wall (11), chromosome mapping (11), Competition (11), Mediterranean (11), MicroRNAs (11), proteomics (11), Arabinoxylan (10), C4 photosynthesis (10), Climate change (10), herbicide resistance (10), MicroRNA (10), alternative splicing (9), bacterial artificial chromosomes (9), disease resistance (9), Endosperm (9), Grass (9), polyploidy (9), qRT-PCR (9), seeds (9), Spain (9), Cell walls (8), Cellulose (8), chromosomes (8), Eddy covariance (8), flowering (8), molecular sequence data (8), phenology (8), Zea mays (8), barley (7), biomass (7), Cereal (7), drought stress (7), functional genomics (7), genome evolution (7), lignin (7), plant proteomics (7), Reference gene (7), Resilience (7), synteny (7), transgenic plants (7), transposable elements (7), Coastal sage scrub (6), gene expressioDOWN>n regulation (6), genetic transformation (6), Grazing (6), maize (6), miRNA (6), Miscanthus (6), Mutants (6), Plant genome (6), reverse genetics (6), Salinity (6), Salt tolerance (6), Signalling (6), single-nucleotide polymorphism (6), apoplast (5), Bioenergy (5), Brachypodium sylvaticum (5), Development (5), diploidy (5), Disturbance (5), drought tolerance (5), Flowering time (5), fluorescence in situ hybridization (5), FT-IR (5), functional divergence (5), Functional traits (5), genetic variation (5)…..

 

[If all keywords are not here (as indicated by .....), they can be accessed from this link; there are links to come back from there]

 

 

Most likely scope for crop use/product (%):
[Please note: When there are only a few papers mentioning a species, care should be taken with the interpretation of these crop use/product results; as well, a mention may relate to the use of a species, or the context in which it grows, rather than a product]

 

cereal (40.66), model (36.17), genetics (6.45), medicinal (2.20), biofuel (2.19), breeding (2.07), cane/bamboo (1.45), fruit (1.21), starch (0.80), sweetener (0.70)…..

 

[To see the full list of crop use/product outcomes, from searching abstracts of the papers that have mentioned this species, select this link; details of the analysis process have also been included; there are links to come back from there]

 

 

Recent mentions of this species in the literature:
[since 2012, with links to abstracts; The references from 1901-2013 which have been used for the trend, keyword and crop use/product analyses below, are listed below these references]

 

Li H, Suo J, Han Y, Liang C, Jin M, Zhang Z and Rao J (2017) The effect of 1-methylcyclopropene, methyl jasmonate and methyl salicylate on lignin accumulation and gene expression in postharvest ‘Xuxiang’ kiwifruit during cold storage. Postharvest Biology and Technology 124, 107-118. http://www.sciencedirect.com/science/article/pii/S0925521416304501

Nair A, Ithnin NB, Sim HL and Appleton DR (2017) Energy Crops A2 - Thomas, Brian. In ‘Encyclopedia of Applied Plant Sciences (Second Edition)’ (Ed.^(Eds Murray BG and Murphy DJ) pp. 164-176. (Academic Press: Oxford). http://www.sciencedirect.com/science/article/pii/B9780123948076001738

Pathak J, Rajneesh, Pandey A, Singh SP and Sinha RP (2017) 1 - World Agriculture and Impact of Biotechnology. In ‘Current Developments in Biotechnology and Bioengineering’ (Ed.^(Eds  pp. 1-22. (Elsevier). http://www.sciencedirect.com/science/article/pii/B9780444636614000013

Ream TS (2017) Vernalization A2 - Thomas, Brian. In ‘Encyclopedia of Applied Plant Sciences (Second Edition)’ (Ed.^(Eds Murray BG and Murphy DJ) pp. 473-482. (Academic Press: Oxford). http://www.sciencedirect.com/science/article/pii/B9780123948076001106

Yang X, Zhang Z, Gu T, Dong M, Peng Q, Bai L and Li Y (2017) Quantitative proteomics reveals ecological fitness cost of multi-herbicide resistant barnyardgrass (Echinochloa crus-galli L.). Journal of Proteomics 150, 160-169. http://www.sciencedirect.com/science/article/pii/S1874391916304201

(2016) Index. In ‘Advances in Agronomy’ (Ed.^(Eds Donald LS) pp. 225-233. (Academic Press). http://www.sciencedirect.com/science/article/pii/S0065211316300104

(2016) Issue Information - Volume Contents. Physiologia Plantarum 157, 520-522. http://dx.doi.org/10.1111/ppl.12482

(2016) Table of Contents. The Plant Journal 86, 361-361. http://dx.doi.org/10.1111/tpj.12978

(2016) Issue Information - TOC. Physiologia Plantarum 157, 401-401. http://dx.doi.org/10.1111/ppl.12371

Ablazov A and Tombuloglu H (2016) Genome-wide identification of the mildew resistance locus O (MLO) gene family in novel cereal model species Brachypodium distachyon. European journal of plant pathology. 145, 239-253. http://dx.doi.org/10.1007/s10658-015-0833-2

Abou-Attia MA, Wang X, Nashaat Al-Attala M, Xu Q, Zhan G and Kang Z (2016) TaMDAR6 acts as a negative regulator of plant cell death and participates indirectly in stomatal regulation during the wheat stripe rust–fungus interaction. Physiologia Plantarum 156, 262-277. http://dx.doi.org/10.1111/ppl.12355

Abraham Z, Iglesias-Fernandez R, Martinez M, Rubio-Somoza I, Diaz I, Carbonero P and Vicente-Carbajosa J (2016) A Developmental Switch of Gene Expression in the Barley Seed Mediated by HvVP1 (Viviparous-1) and HvGAMYB Interactions. Plant Physiology 170, 2146-2158. http://www.plantphysiol.org/cgi/content/abstract/170/4/2146

Abrouk M, Balcárková B, et al. (2016) The in silico identification and characterization of a bread wheat/Triticum militinae introgression line. Plant Biotechnology Journal, n/a-n/a. http://dx.doi.org/10.1111/pbi.12610

Alguacil MdM, Torres MP, Montesinos-Navarro A and Roldan A (2016) Soil Characteristics Driving Arbuscular Mycorrhizal Fungal Communities in Semiarid Mediterranean Soils. Appl. Envir. Microbiol. 82, 3348-3356. http://aem.asm.org/cgi/content/abstract/82/11/3348

Anderson CT (2016) We be jammin: an update on pectin biosynthesis, trafficking and dynamics. J. Exp. Bot. 67, 495-502. http://jxb.oxfordjournals.org/cgi/content/abstract/67/2/495

Augustine RC, York SL, Rytz TC and Vierstra RD (2016) Defining the SUMO System in Maize: SUMOylation Is Up-Regulated during Endosperm Development and Rapidly Induced by Stress. Plant Physiology 171, 2191-2210. http://www.plantphysiol.org/cgi/content/abstract/171/3/2191

Bai J, Liu J, Jiao W, Sa R, Zhang N and Jia R (2016) Proteomic analysis of salt-responsive proteins in oat roots (Avena sativa L.). Journal of the Science of Food and Agriculture 96, 3867-3875. http://dx.doi.org/10.1002/jsfa.7583

Bartlett M, Thompson B, Brabazon H, Del Gizzi R, Zhang T and Whipple C (2016) Evolutionary Dynamics of Floral Homeotic Transcription Factor Protein-Protein Interactions. Mol. Biol. Evol. 33, 1486-1501. http://mbe.oxfordjournals.org/cgi/content/abstract/33/6/1486

Bassi FM, Ghavami F, et al. (2016) Fast-forward genetics by radiation hybrids to saturate the locus regulating nuclear–cytoplasmic compatibility in Triticum. Plant Biotechnology Journal 14, 1716-1726. http://dx.doi.org/10.1111/pbi.12532

Bechtold U, Penfold CA, et al. (2016) Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis. PLANT CELL 28, 345-366. http://www.plantcell.org/cgi/content/abstract/28/2/345

Bessho-Uehara K, Wang DR, et al. (2016) Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice. PNAS 113, 8969-8974. http://www.pnas.org/cgi/content/abstract/113/32/8969

Best NB, Hartwig T, Budka J, Fujioka S, Johal G, Schulz B and Dilkes BP (2016) nana plant2 Encodes a Maize Ortholog of the Arabidopsis Brassinosteroid Biosynthesis Gene DWARF1, Identifying Developmental Interactions between Brassinosteroids and Gibberellins. Plant Physiology 171, 2633-2647. http://www.plantphysiol.org/cgi/content/abstract/171/4/2633

Best NB, Wang X, et al. (2016) Sunflower ‘Sunspot is Hyposensitive to GA3 and has a Missense Mutation in the DELLA Motif of HaDella1. J. Amer. Soc. Hort. Sci. 141, 389-394. http://journal.ashspublications.org/cgi/content/abstract/141/4/389

Bettgenhaeuser J, Corke FMK, Opanowicz M, Green P, Hernandez-Pinzon I, Doonan JH and Moscou MJ (2016) Natural variation in Brachypodium links vernalization and flowering time loci as major flowering determinants. Plant Physiology, pp.16.00813. http://www.plantphysiol.org/cgi/content/abstract/pp.16.00813v1

Betti C, Vanhoutte I, et al. (2016) Sequence-Specific Protein Aggregation Generates Defined Protein Knockdowns in Plants. Plant Physiology 171, 773-787. http://www.plantphysiol.org/cgi/content/abstract/171/2/773

Beyaz R, Sancak C, Yildiz Ç, Kuşvuran Ş and Yildiz M (2016) Physiological responses of the M1 sainfoin (Onobrychis viciifolia Scop) plants to gamma radiation. Applied Radiation and Isotopes 118, 73-79. http://www.sciencedirect.com/science/article/pii/S0969804316306698

Billard V, Maillard A, Coquet L, Jouenne T, Cruz F, Garcia-Mina J-M, Yvin J-C, Ourry A and Etienne P (2016) Mg deficiency affects leaf Mg remobilization and the proteome in Brassica napus. Plant Physiology and Biochemistry 107, 337-343. http://www.sciencedirect.com/science/article/pii/S0981942816302467

Bolle C (2016) Chapter 10 - Structure and Evolution of Plant GRAS Family Proteins A2 - Gonzalez, Daniel H. In ‘Plant Transcription Factors’ (Ed.^(Eds  pp. 153-161. (Academic Press: Boston). http://www.sciencedirect.com/science/article/pii/B9780128008546000105

Bortesi L, Zhu C, et al. (2016) Patterns of CRISPR/Cas9 activity in plants, animals and microbes. Plant Biotechnology Journal, n/a-n/a. http://dx.doi.org/10.1111/pbi.12634

Boutte J, Ferreira de Carvalho J, Rousseau-Gueutin M, Poulain J, Da Silva C, Wincker P, Ainouche M and Salmon A (2016) Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae). Genome Biol Evol 8, 3030-3044. http://gbe.oxfordjournals.org/cgi/content/abstract/8/9/3030

Bredow M, Vanderbeld B and Walker VK (2016) Ice-binding proteins confer freezing tolerance in transgenic Arabidopsis thaliana. Plant Biotechnology Journal, n/a-n/a. http://dx.doi.org/10.1111/pbi.12592

Buanafina MMdO, Fescemyer HW, Sharma M and Shearer EA (2016) Functional testing of a PF02458 homologue of putative rice arabinoxylan feruloyl transferase genes in Brachypodium distachyon. Planta. 243, 659-674. http://dx.doi.org/10.1007/s00425-015-2430-1

Bulli P, Zhang J, Chao S, Chen X and Pumphrey M (2016) Genetic Architecture of Resistance to Stripe Rust in a Global Winter Wheat Germplasm Collection. g3 6, 2237-2253. http://www.g3journal.org/cgi/content/abstract/6/8/2237

Bunyatang O, Chirapongsatonkul N, Bangrak P, Henry R and Churngchow N (2016) Molecular cloning and characterization of a novel bi-functional α-amylase/subtilisin inhibitor from Hevea brasiliensis. Plant Physiology and Biochemistry 101, 76-87. http://www.sciencedirect.com/science/article/pii/S0981942816300134

Bush MS, Pierrat O, et al. (2016) eIF4A RNA Helicase Associates with Cyclin-Dependent Protein Kinase A in Proliferating Cells and Is Modulated by Phosphorylation. Plant Physiology 172, 128-140. http://www.plantphysiol.org/cgi/content/abstract/172/1/128

Cai Q, Fukushima H, Yamamoto M, Ishii N, Sakamoto T, Kurata T, Motose H and Takahashi T (2016) The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol. 57, 1583-1592. http://pcp.oxfordjournals.org/cgi/content/abstract/57/8/1583

Campos MD, Campos C, Cardoso HG, Simon PW, Oliveira M, Nogales A and Arnholdt-Schmitt B (2016) Isolation and characterization of plastid terminal oxidase gene from carrot and its relation to carotenoid accumulation. Plant Gene 5, 13-21. http://www.sciencedirect.com/science/article/pii/S2352407315000347

Canut H, Albenne C and Jamet E (2016) Post-translational modifications of plant cell wall proteins and peptides: A survey from a proteomics point of view. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1864, 983-990. http://www.sciencedirect.com/science/article/pii/S1570963916300358

Cao HX, Vu GTH, Wang W, Appenroth KJ, Messing J and Schubert I (2016) The map-based genome sequence of Spirodela polyrhiza aligned with its chromosomes, a reference for karyotype evolution. New Phytologist 209, 354-363. http://dx.doi.org/10.1111/nph.13592

Carpita NC and Sage RF (2016) ContentSnapshots

Plants and bioenergy. Ann. Bot. 118, i-. http://aob.oxfordjournals.org

http://jxb.oxfordjournals.org

Chai M, Zhou C, et al. (2016) A class II KNOX gene, KNOX4, controls seed physical dormancy. PNAS 113, 6997-7002. http://www.pnas.org/cgi/content/abstract/113/25/6997

Chandler JW (2016) Auxin response factors. Plant, Cell & Environment 39, 1014-1028. http://dx.doi.org/10.1111/pce.12662

Chang C, Bowman John L and Meyerowitz Elliot M (2016) Field Guide to Plant Model Systems. Cell 167, 325-339. http://www.sciencedirect.com/science/article/pii/S0092867416310820

Chang Y-L, Li W-Y, Miao H, Yang S-Q, Li R, Wang X, Li W-Q and Chen K-M (2016) Comprehensive Genomic Analysis and Expression Profiling of the NOX Gene Families under Abiotic Stresses and Hormones in Plants. Genome Biol Evol 8, 791-810. http://gbe.oxfordjournals.org/cgi/content/abstract/8/3/791

Chávez-Calvillo G, Contreras-Paredes CA, Mora-Macias J, Noa-Carrazana JC, Serrano-Rubio AA, Dinkova TD, Carrillo-Tripp M and Silva-Rosales L (2016) Antagonism or synergism between papaya ringspot virus and papaya mosaic virus in Carica papaya is determined by their order of infection. Virology 489, 179-191. http://www.sciencedirect.com/science/article/pii/S0042682215005073

Chellamma S and Pillai BVS (2016) Water stress tolerance in maize. In ‘Water Stress and Crop Plants’ (Ed.^(Eds  pp. 468-483. (John Wiley & Sons, Ltd). http://dx.doi.org/10.1002/9781119054450.ch28

Chen B and Wang Y (2016) Proteomic and Physiological Studies Provide Insight into Photosynthetic Response of Rice (Oryza sativa L.) Seedlings to Microgravity. Photochemistry and Photobiology 92, 561-570. http://dx.doi.org/10.1111/php.12593

Chen Z, Yan W, Sun L, Tian J and Liao H (2016) Proteomic analysis reveals growth inhibition of soybean roots by manganese toxicity is associated with alteration of cell wall structure and lignification. Journal of Proteomics 143, 151-160. http://www.sciencedirect.com/science/article/pii/S1874391916301014

Cheng SJ, Steiner AL, Hollinger DY, Bohrer G and Nadelhoffer KJ (2016) Using satellite-derived optical thickness to assess the influence of clouds on terrestrial carbon uptake. Journal of Geophysical Research: Biogeosciences 121, 2016JG003365. http://dx.doi.org/10.1002/2016JG003365

Cheng X, Deng G, Su Y, Liu JJ, Yang Y, Du GH, Chen ZY and Liu FH (2016) Protein mechanisms in response to NaCl-stress of salt-tolerant and salt-sensitive industrial hemp based on iTRAQ technology. Industrial Crops and Products 83, 444-452. http://www.sciencedirect.com/science/article/pii/S0926669015306798

Chiotta ML, Alaniz Zanon MS, Palazzini JM, Scandiani MM, Formento AN, Barros GG and Chulze SN (2016) Pathogenicity of Fusarium graminearum and F. meridionale on soybean pod blight and trichothecene accumulation. Plant Pathology, n/a-n/a. http://dx.doi.org/10.1111/ppa.12532

Chu C, Lu Z, Wang X, Yang W, Liu Y, Jiao J, Ouyang Y and Yao J (2016) OsSET7, a homologue of ARABIDOPSIS TRITHORAX-RELATED protein that plays a role in grain elongation regulation in rice. Agri Gene 1, 135-142. http://www.sciencedirect.com/science/article/pii/S2352215116300186

Colas I, Macaulay M, et al. (2016) A spontaneous mutation in MutL-Homolog 3 (HvMLH3) affects synapsis and crossover resolution in the barley desynaptic mutant des10. New Phytologist 212, 693-707. http://dx.doi.org/10.1111/nph.14061

Collonnier C, Nogué F and Casacuberta JM (2016) Chapter 13 - Targeted Genetic Modification in Crops Using Site-Directed Nucleases A2 - Watson, Ronald Ross. In ‘Genetically Modified Organisms in Food’ (Ed.^(Eds Preedy VR) pp. 133-145. (Academic Press: San Diego). http://www.sciencedirect.com/science/article/pii/B9780128022597000130

Covshoff S, Szecowka M, et al. (2016) C4 Photosynthesis in the Rice Paddy: Insights from the Noxious Weed Echinochloa glabrescens. Plant Physiology 170, 57-73. http://www.plantphysiol.org/cgi/content/abstract/170/1/57

Cuevas HE, Zhou C, et al. (2016) The Evolution of Photoperiod-Insensitive Flowering in Sorghum, A Genomic Model for Panicoid Grasses. Mol. Biol. Evol. 33, 2417-2428. http://mbe.oxfordjournals.org/cgi/content/abstract/33/9/2417

Cuming AC (2016) Gene tagging in Physcomitrella patens: an addition to the genetic toolbox. New Phytologist 212, 543-545. http://dx.doi.org/10.1111/nph.14201

Dang L and Van Damme EJM (2016) Genome-wide identification and domain organization of lectin domains in cucumber. Plant Physiology and Biochemistry 108, 165-176. http://www.sciencedirect.com/science/article/pii/S0981942816302765

de Vries J, Fischer AM, Roettger M, Rommel S, Schluepmann H, Bräutigam A, Carlsbecker A and Gould SB (2016) Cytokinin-induced promotion of root meristem size in the fern Azolla supports a shoot-like origin of euphyllophyte roots. New Phytologist 209, 705-720. http://dx.doi.org/10.1111/nph.13630

Delory BM, Baudson C, Brostaux Y, Lobet G, du Jardin P, Pagès Lc and Delaplace P (2016) archiDART: an R package for the automated computation of plant root architectural traits. Plant and soil. 398, 351-365. http://dx.doi.org/10.1007/s11104-015-2673-4

Deng H, Zhang L-S, Zhang G-Q, Zheng B-Q, Liu Z-J and Wang Y (2016) Evolutionary history of PEPC genes in green plants: Implications for the evolution of CAM in orchids. Molecular Phylogenetics and Evolution 94, Part B, 559-564. http://www.sciencedirect.com/science/article/pii/S1055790315003103

Des Marais DL, Razzaque S, Hernandez KM, Garvin DF and Juenger TE (2016) Quantitative trait loci associated with natural diversity in water-use efficiency and response to soil drying in Brachypodium distachyon. Plant Science 251, 2-11. http://www.sciencedirect.com/science/article/pii/S0168945216300425

Des Marais DL, Razzaque S, Hernandez KM, Garvin DF and Juenger TE (2016) Quantitative trait loci associated with natural diversity in water-use efficiency and response to soil drying in Brachypodium distachyon. Plant science., 251. http://dx.doi.org/10.1016/j.plantsci.2016.03.010

Desiderio F, Torp AM, Valè G and Rasmussen SK (2016) TILLING in Plant Disease Control. In ‘Plant Pathogen Resistance Biotechnology’ (Ed.^(Eds  pp. 365-384. (John Wiley & Sons, Inc). http://dx.doi.org/10.1002/9781118867716.ch19

Dessaux Y, Grandclément C and Faure D (2016) Engineering the Rhizosphere. Trends in Plant Science 21, 266-278. http://www.sciencedirect.com/science/article/pii/S1360138516000030

Devic M and Roscoe T (2016) Seed maturation: Simplification of control networks in plants. Plant Science 252, 335-346. http://www.sciencedirect.com/science/article/pii/S0168945216303612

Dickens SJM, Mangla S, Preston KL and Suding KN (2016) Embracing variability: environmental dependence and plant community context in ecological restoration. Restoration Ecology 24, 119-127. http://dx.doi.org/10.1111/rec.12288

Ding L-N, Yang G-X, Cao J, Zhou Y and Yang R-Y (2016) Molecular cloning and functional characterization of a DNA damage-inducible (DDI) gene in Arabidopsis. Physiological and Molecular Plant Pathology 94, 126-133. http://www.sciencedirect.com/science/article/pii/S0885576516300649

Ding W, Wang Y, Fang W, Gao S, Li X and Xiao K (2016) TaZAT8, a C2H2-ZFP type transcription factor gene in wheat, plays critical roles in mediating tolerance to Pi deprivation through regulating P acquisition, ROS homeostasis and root system establishment. Physiologia Plantarum 158, 297-311. http://dx.doi.org/10.1111/ppl.12467

Dinkins RD, Nagabhyru P, Graham MA, Boykin D and Schardl CL (2016) Transcriptome response of Lolium arundinaceum to its fungal endophyte Epichloë coenophiala. New Phytologist, n/a-n/a. http://dx.doi.org/10.1111/nph.14103

do Amaral FP, Pankievicz VnCS, Arisi ACM, de Souza EM, Pedrosa F and Stacey G (2016) Differential growth responses of Brachypodium distachyon genotypes to inoculation with plant growth promoting rhizobacteria. Plant molecular biology. 90, 689-697. http://dx.doi.org/10.1007/s11103-016-0449-8

Dong L, Huo N, et al. (2016) Rapid evolutionary dynamics in a 2.8-Mb chromosomal region containing multiple prolamin and resistance gene families in Aegilops tauschii. The Plant Journal 87, 495-506. http://dx.doi.org/10.1111/tpj.13214

Duvick J, Standage DS, Merchant N and Brendel VP (2016) xGDBvm: A Web GUI-Driven Workflow for Annotating Eukaryotic Genomes in the Cloud. PLANT CELL 28, 840-854. http://www.plantcell.org/cgi/content/abstract/28/4/840

Ehlers BK, Damgaard CF and Laroche F (2016) Intraspecific genetic variation and species coexistence in plant communities. Biol Lett 12, 20150853-. http://rsbl.royalsocietypublishing.org/cgi/content/abstract/12/1/20150853

Eichten SR, Stuart T, Srivastava A, Lister R and Borevitz JO (2016) DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity. Genome Res., gr.205468.116. http://genome.cshlp.org/cgi/content/abstract/gr.205468.116v2

El Baidouri M, Murat F, et al. (2016) Reconciling the evolutionary origin of bread wheat (Triticum aestivum). New Phytologist, n/a-n/a. http://dx.doi.org/10.1111/nph.14113

El Soufi K and Michel CJ (2016) Circular code motifs in genomes of eukaryotes. Journal of Theoretical Biology 408, 198-212. http://www.sciencedirect.com/science/article/pii/S0022519316302053

El-Azaz J, de la Torre F, Ávila C and Cánovas FM (2016) Identification of a small protein domain present in all plant lineages that confers high prephenate dehydratase activity. The Plant Journal 87, 215-229. http://dx.doi.org/10.1111/tpj.13195

Fawcett JA and Innan H (2016) High Similarity between Distantly Related Species of a Plant SINE Family Is Consistent with a Scenario of Vertical Transmission without Horizontal Transfers. Mol. Biol. Evol. 33, 2593-2604. http://mbe.oxfordjournals.org/cgi/content/abstract/33/10/2593

Feki K and Brini F (2016) Role of proteins in alleviating drought stress in plants. In ‘Water Stress and Crop Plants’ (Ed.^(Eds  pp. 165-176. (John Wiley & Sons, Ltd). http://dx.doi.org/10.1002/9781119054450.ch12

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Fatichi S and Ivanov VY (2014) Interannual variability of evapotranspiration and vegetation productivity. Water Resources Research 50, 3275-3294. http://dx.doi.org/10.1002/2013WR015044

Feng H, Duan X, Zhang Q, Li X, Wang B, Huang L, Wang X and Kang Z (2014) The target gene of tae-miR164, a novel NAC transcription factor from the NAM subfamily, negatively regulates resistance of wheat to stripe rust. Molecular Plant Pathology 15, 284-296. http://dx.doi.org/10.1111/mpp.12089

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Feng H, Wang X, Zhang Q, Fu Y, Feng C, Wang B, Huang L and Kang Z (2014) Monodehydroascorbate reductase gene, regulated by the wheat PN-2013 miRNA, contributes to adult wheat plant resistance to stripe rust through ROS metabolism. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1839, 1-12. http://www.sciencedirect.com/science/article/pii/S1874939913001594

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Fleischmann A, Michael TP, Rivadavia F, Sousa A, Wang W, Temsch EM, Greilhuber J, Muller KF and Heubl G (2014) Evolution of genome size and chromosome number in the carnivorous plant genus Genlisea (Lentibulariaceae), with a new estimate of the minimum genome size in angiosperms. Ann. Bot. 114, 1651-1663. http://aob.oxfordjournals.org/cgi/content/abstract/114/8/1651

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Fu J, Yang L and Dai S (2014) Conservation of Arabidopsis thaliana circadian clock genes in Chrysanthemum lavandulifolium. Plant Physiology and Biochemistry 80, 337-347. http://www.sciencedirect.com/science/article/pii/S0981942814001351

Fu Y, Duan X, Tang C, Li X, Voegele RT, Wang X, Wei G and Kang Z (2014) TaADF7, an actin-depolymerizing factor, contributes to wheat resistance against Puccinia striiformis f. sp. tritici. The Plant Journal 78, 16-30. http://dx.doi.org/10.1111/tpj.12457

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Garces M, Le Provost G, Lalanne C, Claverol S, Barre A, Plomion C and Herrera R (2014) Proteomic analysis during ontogenesis of secondary xylem in maritime pine. Tree Physiol 34, 1263-1277. http://treephys.oxfordjournals.org/cgi/content/abstract/34/11/1263

Gardiner LJ, Gawroński P, Olohan L, Schnurbusch T, Hall N and Hall A (2014) Using genic sequence capture in combination with a syntenic pseudo genome to map a deletion mutant in a wheat species. Plant journal. 80, 895-904. http://dx.doi.org/10.1111/tpj.12660

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Girin T, David LC, Chardin C, Sibout R, Krapp A, Ferrario-Méry S and Daniel-Vedele Fo (2014) Brachypodium: a promising hub between model species and cereals. Journal of experimental botany. 65, 5683-5696. http://dx.doi.org/10.1093/jxb/eru376

Girin T, David LC, Chardin C, Sibout R, Krapp A, Ferrario-Mery S and Daniel-Vedele F (2014) Brachypodium: a promising hub between model species and cereals. J. Exp. Bot. 65, 5683-5696. http://jxb.oxfordjournals.org/cgi/content/abstract/65/19/5683

Glémin S, Clément Y, David J and Ressayre A (2014) GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis. Trends in Genetics 30, 263-270. http://www.sciencedirect.com/science/article/pii/S0168952514000808

Glover-Cutter KM, Alderman S, Dombrowski JE and Martin RC (2014) Enhanced Oxidative Stress Resistance through Activation of a Zinc Deficiency Transcription Factor in Brachypodium distachyon. Plant Physiology 166, 1492-1505. http://www.plantphysiol.org/cgi/content/abstract/166/3/1492

Goff SA, Schnable JC and Feldmann KA (2014) Chapter Three - The Evolution of Plant Gene and Genome Sequencing. In ‘Advances in Botanical Research’ (Ed.^(Eds Andrew HP) pp. 47-90. (Academic Press). http://www.sciencedirect.com/science/article/pii/B9780124171633000032

González-Calle V, Iglesias-Fernández R, Carbonero P and Barrero-Sicilia C (2014) The BdGAMYB protein from Brachypodium distachyon interacts with BdDOF24 and regulates transcription of the BdCathB gene upon seed germination. Planta. 240, 539-552. http://dx.doi.org/10.1007/s00425-014-2105-3

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Grandaubert J, Balesdent M-H and Rouxel T (2014) Chapter Three - Evolutionary and Adaptive Role of Transposable Elements in Fungal Genomes. In ‘Advances in Botanical Research’ (Ed.^(Eds Francis MM) pp. 79-107. (Academic Press). http://www.sciencedirect.com/science/article/pii/B9780123979407000033

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Guerra-Guimarães L, Vieira A, Chaves I, Pinheiro C, Queiroz V, Renaut J and Ricardo CP (2014) Effect of greenhouse conditions on the leaf apoplastic proteome of Coffea arabica plants. Journal of Proteomics 104, 128-139. http://www.sciencedirect.com/science/article/pii/S1874391914001468

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Hammami R, Jouve Ns, Soler C, Frieiro E and González JM (2014) Genetic diversity of SSR and ISSR markers in wild populations of Brachypodium distachyon and its close relatives B. stacei and B. hybridum (Poaceae). Plant systematics and evolution. 300, 2029-2040. http://dx.doi.org/10.1007/s00606-014-1021-0

Han J, Xie H, Sun Q, Wang J, Lu M, Wang W, Guo E and Pan J (2014) Bioinformatic identification and experimental validation of miRNAs from foxtail millet (Setaria italica). Gene 546, 367-377. http://www.sciencedirect.com/science/article/pii/S0378111914006283

Han R, Yan Y, Zhou P and Zhao H-x (2014) Comparison of Two MicroRNA Quantification Methods for Assaying MicroRNA Expression Profiles in Wheat (Triticum aestivum L.). Journal of Integrative Agriculture 13, 733-740. http://www.sciencedirect.com/science/article/pii/S2095311913603627

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Havis ND, Nyman M and Oxley SJP (2014) Evidence for seed transmission and symptomless growth of Ramularia collo-cygni in barley (Hordeum vulgare). Plant Pathology 63, 929-936. http://dx.doi.org/10.1111/ppa.12162

Heitkam T, Holtgräwe D, Dohm JC, Minoche AE, Himmelbauer H, Weisshaar B and Schmidt T (2014) Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades. The Plant Journal 79, 385-397. http://dx.doi.org/10.1111/tpj.12565

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Hijazi M, Roujol D, Nguyen-Kim H, del Rocio Cisneros Castillo L, Saland E, Jamet E and Albenne C (2014) Arabinogalactan protein 31 (AGP31), a putative network-forming protein in Arabidopsis thaliana cell walls? Ann. Bot. 114, 1087-1097. http://aob.oxfordjournals.org/cgi/content/abstract/114/6/1087

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Hoang HH, Sechet J, Bailly C, Leymarie J and Corbineau F (2014) Inhibition of germination of dormant barley (Hordeum vulgareL.) grains by blue light as related to oxygen and hormonal regulation. Plant, Cell & Environment 37, 1393-1403. http://dx.doi.org/10.1111/pce.12239

Hofmann N (2014) Cryptochromes and Seed Dormancy: The Molecular Mechanism of Blue Light Inhibition of Grain Germination. PLANT CELL 26, 846-. http://www.plantcell.org

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Hu J, Sun L, Zhu Z, Zheng Y, Xiong W and Ding Y (2014) Characterization of conserved microRNAs from five different cucurbit species using computational and experimental analysis. Biochimie 102, 137-144. http://www.sciencedirect.com/science/article/pii/S0300908414000820

Hu Y-X, Yang X, Li X-L, Yu X-D and Li Q-L (2014) The SlASR gene cloned from the extreme halophyte Suaeda liaotungensis K. enhances abiotic stress tolerance in transgenic Arabidopsis thaliana. Gene 549, 243-251. http://www.sciencedirect.com/science/article/pii/S0378111914008956

Huang D, Zhang Y, Jin M, Li H, Song Z, Wang Y and Chen J (2014) Characterization and high cross-species transferability of microsatellite markers from the floral transcriptome of Aspidistra saxicola (Asparagaceae). Molecular Ecology Resources 14, 569-577. http://dx.doi.org/10.1111/1755-0998.12197

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Bennett MD and Leitch IJ (2013) CORRECTIONS

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Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inzé D, Pè ME and Mica E (2013) Addressing the Role of microRNAs in Reprogramming Leaf Growth during Drought Stress in Brachypodium distachyon. Molecular Plant 6, 423-443. http://www.sciencedirect.com/science/article/pii/S1674205214601015

Besnard G, Christin P-A, Male P-JG, Coissac E, Ralimanana H and Vorontsova MS (2013) Phylogenomics and taxonomy of Lecomtelleae (Poaceae), an isolated panicoid lineage from Madagascar. Ann. Bot., mct174. http://aob.oxfordjournals.org/cgi/content/abstract/mct174v1

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Boavida LC, Qin P, Broz M, Becker JD and McCormick S (2013) Arabidopsis Tetraspanins Are Confined to Discrete Expression Domains and Cell Types in Reproductive Tissues and Form Homo- and Heterodimers When Expressed in Yeast. Plant Physiology 163, 696-712. http://www.plantphysiol.org/cgi/content/abstract/163/2/696

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Campoli C, Pankin A, Drosse B, Casao CM, Davis SJ and von Korff M (2013) HvLUX1 is a candidate gene underlying the early maturity 10 locus in barley: phylogeny, diversity, and interactions with the circadian clock and photoperiodic pathways. New Phytologist 199, 1045-1059. http://dx.doi.org/10.1111/nph.12346

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Chaffey N (2013) Plant Cuttings. Ann. Bot. 112, iii-. http://aob.oxfordjournals.org

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Chang Y-M, Chang C-L, Li W-H and Shih AC-C (2013) Historical profiling of maize duplicate genes sheds light on the evolution of C4 photosynthesis in grasses. Molecular Phylogenetics and Evolution 66, 453-462. http://www.sciencedirect.com/science/article/pii/S1055790312003181

Chen C, Chen H, Shan J-X, Zhu M-Z, Shi M, Gao J-P and Lin H-X (2013) Genetic and Physiological Analysis of a Novel Type of Interspecific Hybrid Weakness in Rice. Mol Plant 6, 716-728. http://mplant.oxfordjournals.org/cgi/content/abstract/6/3/716

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Chen Z, Huang J, Muttucumaru N, Powers SJ and Halford NG (2013) Expression analysis of abscisic acid (ABA) and metabolic signalling factors in developing endosperm and embryo of barley. Journal of Cereal Science 58, 255-262. http://www.sciencedirect.com/science/article/pii/S0733521013001161

Cheng L, Li X, et al. (2013) Overexpression of sheepgrass R1-MYB transcription factor LcMYB1 confers salt tolerance in transgenic Arabidopsis. Plant Physiology and Biochemistry 70, 252-260. http://www.sciencedirect.com/science/article/pii/S098194281300199X

Cheng X, Chen W, Zhou Z, Liu J and Wang H (2013) Functional characterization of a novel tropinone reductase-like gene in Dendrobium nobile Lindl. Journal of Plant Physiology 170, 958-964. http://www.sciencedirect.com/science/article/pii/S0176161713001028

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Corral JM, Vogel H, Aliyu OM, Hensel G, Thiel T, Kumlehn J and Sharbel TF (2013) A Conserved Apomixis-Specific Polymorphism Is Correlated with Exclusive Exonuclease Expression in Premeiotic Ovules of Apomictic Boechera Species. Plant Physiology 163, 1660-1672. http://www.plantphysiol.org/cgi/content/abstract/163/4/1660

Cray JA, Bell ANW, Bhaganna P, Mswaka AY, Timson DJ and Hallsworth JE (2013) The biology of habitat dominance; can microbes behave as weeds? Microbial Biotechnology 6, 453-492. http://dx.doi.org/10.1111/1751-7915.12027

Crocco CD and Botto JF (2013) BBX proteins in green plants: Insights into their evolution, structure, feature and functional diversification. Gene 531, 44-52. http://www.sciencedirect.com/science/article/pii/S0378111913010676

Cseh A, Soós V, Rakszegi M, Türkösi E, Balázs E and Molnár-Láng M (2013) Expression of HvCslF9 and HvCslF6 barley genes in the genetic background of wheat and their influence on the wheat β-glucan content. Annals of Applied Biology 163, 142-150. http://dx.doi.org/10.1111/aab.12043

Dangwal M, Malik G, Kapoor S and Kapoor M (2013) De Novo Methyltransferase, OsDRM2, Interacts with the ATP-Dependent RNA Helicase, OseIF4A, in Rice. Journal of Molecular Biology 425, 2853-2866. http://www.sciencedirect.com/science/article/pii/S0022283613003355

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Deng Z, Glousker G, et al. (2013) Inherited mutations in the helicase RTEL1 cause telomere dysfunction and Hoyeraal-Hreidarsson syndrome. PNAS 110, E3408-3416. http://www.pnas.org/cgi/content/abstract/110/36/E3408

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Doblas VG, Amorim-Silva V, et al. (2013) The SUD1 Gene Encodes a Putative E3 Ubiquitin Ligase and Is a Positive Regulator of 3-Hydroxy-3-Methylglutaryl Coenzyme A Reductase Activity in Arabidopsis. PLANT CELL 25, 728-743. http://www.plantcell.org/cgi/content/abstract/25/2/728

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Bermejo LA, de Nascimento L, Mata J, Fernández-Lugo S, Camacho A and Arévalo JR (2012) Responses of plant functional groups in grazed and abandoned areas of a Natural Protected Area. Basic and Applied Ecology 13, 312-318. http://www.sciencedirect.com/science/article/pii/S1439179112000576

Berthet S, Thevenin J, et al. (2012) Chapter 5 - Role of Plant Laccases in Lignin Polymerization. In ‘Advances in Botanical Research’ (Ed.^(Eds Lise J and Catherine L) pp. 145-172. (Academic Press). http://www.sciencedirect.com/science/article/pii/B9780124160231000057

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Cambra I, Martinez M, Dader B, Gonzalez-Melendi P, Gandullo J, Santamaria ME and Diaz I (2012) ContentSnapshots

A cathepsin F-like peptidase involved in barley grain protein mobilization, HvPap-1, is modulated by its own propeptide and by cystatins. Ann. Bot. 110, i-. http://aob.oxfordjournals.org

http://jxb.oxfordjournals.org/cgi/content/abstract/63/12/4615

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Carro L, Rivas R, Leon-Barrios M, Gonzalez-Tirante M, Velazquez E and Valverde A (2012) Herbaspirillum canariense sp. nov., Herbaspirillum aurantiacum sp. nov. and Herbaspirillum soli sp. nov., isolated from volcanic mountain soil, and emended description of the genus Herbaspirillum. Int J Syst Evol Microbiol 62, 1300-1306. http://ijs.sgmjournals.org/cgi/content/abstract/62/Pt_6/1300

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Chen D, Yuan C, Zhang J, Zhang Z, Bai L, Meng Y, Chen L-L and Chen M (2012) PlantNATsDB: a comprehensive database of plant natural antisense transcripts. Nucleic Acids Res. 40, D1187-1193. http://nar.oxfordjournals.org/cgi/content/abstract/40/D1/D1187

Chen H-M, Pang Y, Zeng J, Ding Q, Yin S-Y, Liu C, Lu M-Z, Cui K-M and He X-Q (2012) The Ca2+-dependent DNases are Involved in Secondary Xylem Development in Eucommia ulmoides. Journal of Integrative Plant Biology 54, 456-470. http://dx.doi.org/10.1111/j.1744-7909.2012.01134.x

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Chiniquy D, Sharma V, et al. (2012) XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan. PNAS 109, 17117-17122. http://www.pnas.org/cgi/content/abstract/109/42/17117

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Christians MJ, Gingerich DJ, Hua Z, Lauer TD and Vierstra RD (2012) The Light-Response BTB1 and BTB2 Proteins Assemble Nuclear Ubiquitin Ligases That Modify Phytochrome B and D Signaling in Arabidopsis. Plant Physiology 160, 118-134. http://www.plantphysiol.org/cgi/content/abstract/160/1/118

Clotault J, Thuillet A-C, Buiron M, De Mita S, Couderc M, Haussmann BIG, Mariac C and Vigouroux Y (2012) Evolutionary History of Pearl Millet (Pennisetum glaucum [L.] R. Br.) and Selection on Flowering Genes since Its Domestication. Mol. Biol. Evol. 29, 1199-1212. http://mbe.oxfordjournals.org/cgi/content/abstract/29/4/1199

Coiffait-Gombault C, Buisson E and Dutoit T (2012) Are old Mediterranean grasslands resilient to human disturbances? Acta Oecologica 43, 86-94. http://www.sciencedirect.com/science/article/pii/S1146609X12000513

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Cronn R, Knaus BJ, Liston A, Maughan PJ, Parks M, Syring JV and Udall J (2012) Targeted enrichment strategies for next-generation plant biology. Am. J. Botany 99, 291-311. http://www.amjbot.org/cgi/content/abstract/99/2/291

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Dal-Bianco M, Carneiro MS, Hotta CT, Chapola RG, Hoffmann HP, Garcia AAF and Souza GM (2012) Sugarcane improvement: how far can we go? Current Opinion in Biotechnology 23, 265-270. http://www.sciencedirect.com/science/article/pii/S095816691100677X

Dassanayake M, Oh D-H, Yun D-J, Bressan RA, Cheeseman JM and Hans Bohnert J (2012) 2 - The scope of things to come: New paradigms in biotechnology. In ‘Plant Biotechnology and Agriculture’ (Ed.^(Eds Arie A and Paul Michael H) pp. 19-34. (Academic Press: San Diego). http://www.sciencedirect.com/science/article/pii/B978012381466100002X

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Davidson R, Gowda M, Moghe G, Lin H, Vaillancourt B, Shiu S, Jiang N and Robin Buell C (2012) Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution. Plant J 71, 492-502.

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Delaux P-M, Xie X, et al. (2012) Origin of strigolactones in the green lineage. New Phytologist 195, 857-871. http://dx.doi.org/10.1111/j.1469-8137.2012.04209.x

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Deng Z, Xu S, Chalkley RJ, Oses-Prieto JA, Burlingame AL, Wang ZY and Kutschera U (2012) Rapid auxin-mediated changes in the proteome of the epidermal cells in rye coleoptiles: implications for the initiation of growth. Plant Biology 14, 420-427. http://dx.doi.org/10.1111/j.1438-8677.2011.00513.x

Dickinson H, Costa L and Gutierrez-Marcos J (2012) Epigenetic neofunctionalisation and regulatory gene evolution in grasses. Trends in Plant Science 17, 389-394. http://www.sciencedirect.com/science/article/pii/S1360138512000805

Diekmann K, Hodkinson TR and Barth S (2012) New chloroplast microsatellite markers suitable for assessing genetic diversity of Lolium perenne and other related grass species. Ann. Bot. 110, 1327-1339. http://aob.oxfordjournals.org/cgi/content/abstract/110/6/1327

Dobritsa AA and Coerper D (2012) The Novel Plant Protein INAPERTURATE POLLEN1 Marks Distinct Cellular Domains and Controls Formation of Apertures in the Arabidopsis Pollen Exine. PLANT CELL 24, 4452-4464. http://www.plantcell.org/cgi/content/abstract/24/11/4452

Drewes M, Tietjen K and Sparks TC (2012) High-Throughput Screening in Agrochemical Research. In ‘Modern Methods in Crop Protection Research’ (Ed.^(Eds  pp. 1-20. (Wiley-VCH Verlag GmbH & Co. KGaA). http://dx.doi.org/10.1002/9783527655908.ch1

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Faure S, Turner AS, Gruszka D, Christodoulou V, Davis SJ, von Korff M and Laurie DA (2012) Mutation at the circadian clock gene EARLY MATURITY 8 adapts domesticated barley (Hordeum vulgare) to short growing seasons. PNAS 109, 8328-8333. http://www.pnas.org/cgi/content/abstract/109/21/8328

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Fleury D, Baumann U and Langridge P (2012) 6 - Plant genome sequencing: Models for developing synteny maps and association mapping. In ‘Plant Biotechnology and Agriculture’ (Ed.^(Eds Arie A and Paul Michael H) pp. 83-97. (Academic Press: San Diego). http://www.sciencedirect.com/science/article/pii/B9780123814661000067

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Fursova O, Pogorelko G and Zabotina OA (2012) An efficient method for transient gene expression in monocots applied to modify the Brachypodium distachyon cell wall. Ann. Bot. 110, 47-56. http://aob.oxfordjournals.org/cgi/content/abstract/110/1/47

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Gao H, Guo D-M, Liu W-J, Ran J-H and Wang X-Q (2012) Evolution of the 4-coumarate:coenzyme A ligase (4CL) gene family: Conserved evolutionary pattern and two new gene classes in gymnosperms. Journal of Systematics and Evolution 50, 195-205. http://dx.doi.org/10.1111/j.1759-6831.2012.00187.x

Gao Q, Yue G, Li W, Wang J, Xu J and Yin Y (2012) Recent Progress Using High-throughput Sequencing Technologies in Plant Molecular BreedingF. Journal of Integrative Plant Biology 54, 215-227. http://dx.doi.org/10.1111/j.1744-7909.2012.01115.x

Gasperini D, Greenland A, Hedden P, Dreos R, Harwood W and Griffiths S (2012) Genetic and physiological analysis of Rht8 in bread wheat: an alternative source of semi-dwarfism with a reduced sensitivity to brassinosteroids. J. Exp. Bot. 63, 4419-4436. http://jxb.oxfordjournals.org/cgi/content/abstract/63/12/4419

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Gawroński P and Schnurbusch T (2012) High-density mapping of the earliness per se-3Am (Eps-3A m ) locus in diploid einkorn wheat and its relation to the syntenic regions in rice and Brachypodium distachyon L. Molecular breeding. 30, 1097-1108. http://dx.doi.org/10.1007/s11032-011-9697-0

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Glasser TA, Landau SY, Ungar ED, Perevolotsky A, Dvash L, Muklada H, Kababya D and Walker JW (2012) Foraging selectivity of three goat breeds in a Mediterranean shrubland. Small Ruminant Research 102, 7-12. http://www.sciencedirect.com/science/article/pii/S0921448811003397

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Gupta SK, Rai AK, Kanwar SS, Chand D, Singh NK and Sharma TR (2012) The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice. J. Exp. Bot. 63, 757-772. http://jxb.oxfordjournals.org/cgi/content/abstract/63/2/757

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Hardtke CS and Nieminen K (2012) 13 - Advances in identifying and exploiting natural genetic variation. In ‘Plant Biotechnology and Agriculture’ (Ed.^(Eds Arie A and Paul Michael H) pp. 195-205. (Academic Press: San Diego). http://www.sciencedirect.com/science/article/pii/B9780123814661000134

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Rivera AL, Gómez-Lim M, Fernández F and Loske AM (2012) Physical methods for genetic plant transformation. Physics of Life Reviews 9, 308-345. http://www.sciencedirect.com/science/article/pii/S1571064512000498

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Rosenfeld JA and DeSalle R (2012) E value cutoff and eukaryotic genome content phylogenetics. Molecular Phylogenetics and Evolution 63, 342-350. http://www.sciencedirect.com/science/article/pii/S105579031200019X

Rowland O and Domergue F (2012) Plant fatty acyl reductases: Enzymes generating fatty alcohols for protective layers with potential for industrial applications. Plant Science 193–194, 28-38. http://www.sciencedirect.com/science/article/pii/S0168945212000957

Sabelli PA (2012) Replicate and die for your own good: Endoreduplication and cell death in the cereal endosperm. Journal of Cereal Science 56, 9-20. http://www.sciencedirect.com/science/article/pii/S0733521011001615

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Sang X, Li Y, et al. (2012) CHIMERIC FLORAL ORGANS1, Encoding a Monocot-Specific MADS Box Protein, Regulates Floral Organ Identity in Rice. Plant Physiology 160, 788-807. http://www.plantphysiol.org/cgi/content/abstract/160/2/788

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Schnable JC, Freeling M and Lyons E (2012) ContentSnapshots

Genome-Wide Analysis of Syntenic Gene Deletion in the Grasses. Ann. Bot. 109, i-. http://aob.oxfordjournals.org

http://gbe.oxfordjournals.org/cgi/content/abstract/4/3/265

Schnable JC, Freeling M and Lyons E (2012) Genome-Wide Analysis of Syntenic Gene Deletion in the Grasses. Genome Biol Evol 4, 265-277. http://gbe.oxfordjournals.org/cgi/content/abstract/4/3/265

Schweiger R, Muller NC, Schmitt MJ, Soll J and Schwenkert S (2012) AtTPR7 is a chaperone-docking protein of the Sec translocon in Arabidopsis. J. Cell Sci. 125, 5196-5207. http://jcs.biologists.org/cgi/content/abstract/125/21/5196

Seo PJ, Hong S-Y, Ryu JY, Jeong E-Y, Kim S-G, Baldwin IT and Park C-M (2012) Targeted inactivation of transcription factors by overexpression of their truncated forms in plants. The Plant Journal, no-no. http://dx.doi.org/10.1111/j.1365-313X.2012.05069.x

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Serres-Giardi L, Belkhir K, David J and Glemin S (2012) Patterns and Evolution of Nucleotide Landscapes in Seed Plants. PLANT CELL 24, 1379-1397. http://www.plantcell.org/cgi/content/abstract/24/4/1379

Shaw LM, Turner AS and Laurie DA (2012) The impact of photoperiod insensitive Ppd-1a mutations on the photoperiod pathway across the three genomes of hexaploid wheat (Triticum aestivum). The Plant Journal 71, 71-84. http://dx.doi.org/10.1111/j.1365-313X.2012.04971.x

Shelton D, Stranne M, et al. (2012) Transcription Factors of Lotus: Regulation of Isoflavonoid Biosynthesis Requires Coordinated Changes in Transcription Factor Activity. Plant Physiology 159, 531-547. http://www.plantphysiol.org/cgi/content/abstract/159/2/531

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Sibout R and Höfte H (2012) Plant Cell Biology: The ABC of Monolignol Transport. Current Biology 22, R533-R535. http://www.sciencedirect.com/science/article/pii/S096098221200526X

Silvar C, Perovic D, Scholz U, Casas A, Igartua E and Ordon F (2012) Fine mapping and comparative genomics integration of two quantitative trait loci controlling resistance to powdery mildew in a Spanish barley landrace. Theor Appl Genet 124, 49-62.

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Smith S and De Smet I (2012) Root system architecture: insights from Arabidopsis and cereal crops. Phil Trans R Soc B 367, 1441-1452. http://rstb.royalsocietypublishing.org/cgi/content/abstract/367/1595/1441

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Sreenivasulu N and Schnurbusch T (2012) A genetic playground for enhancing grain number in cereals. Trends in Plant Science 17, 91-101. http://www.sciencedirect.com/science/article/pii/S1360138511002469

Stamm P, Verma V, Ramamoorthy R and Kumar PP (2012) Manipulation of plant architecture to enhance lignocellulosic biomass. AoB Plants 2012, pls026-. http://aobpla.oxfordjournals.org/cgi/content/abstract/2012/0/pls026

Steele PR, Hertweck KL, Mayfield D, McKain MR, Leebens-Mack J and Pires JC (2012) Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae. Am. J. Botany 99, 330-348. http://www.amjbot.org/cgi/content/abstract/99/2/330

Stobiecki M, Kachlicki P and Jeleñ H (2012) Mass Spectrometry in Agriculture, Food, and Flavors: Selected Applications. In ‘Mass Spectrometry Handbook’ (Ed.^(Eds  pp. 529-558. (John Wiley & Sons, Inc.). http://dx.doi.org/10.1002/9781118180730.ch24

Sun C, Shepard DB, Chong RA, Lopez Arriaza J, Hall K, Castoe TA, Feschotte C, Pollock DD and Mueller RL (2012) LTR Retrotransposons Contribute to Genomic Gigantism in Plethodontid Salamanders. Genome Biol Evol 4, 168-183. http://gbe.oxfordjournals.org/cgi/content/abstract/4/2/168

Sunkar R, Li Y-F and Jagadeeswaran G (2012) Functions of microRNAs in plant stress responses. Trends in Plant Science 17, 196-203. http://www.sciencedirect.com/science/article/pii/S136013851200026X

Taheri A, Robinson S, Parkin I and Gruber M (2012) Revised selection criteria for candidate restriction enzymes in genome walking. PLoS One 7, e35117.

Takamizawa A, Mishina K and Hiraoka K (2012) Observation of dimethylaminoethyl methacrylate–myoglobin binding reaction using laser spray mass spectrometry. Journal of Mass Spectrometry 47, 221-225. http://dx.doi.org/10.1002/jms.2040

Taketa S, Yuo T, Tonooka T, Tsumuraya Y, Inagaki Y, Haruyama N, Larroque O and Jobling SA (2012) Functional characterization of barley betaglucanless mutants demonstrates a unique role for CslF6 in (1,3;1,4)-{beta}-D-glucan biosynthesis. J. Exp. Bot. 63, 381-392. http://jxb.oxfordjournals.org/cgi/content/abstract/63/1/381

Tan S and Wu S (2012) Genome Wide Analysis of Nucleotide-Binding Site Disease Resistance Genes in Brachypodium distachyon. Comp Funct Genomics 2012, 418208.

Tang Z, Zhang L, Xu C, Yuan S, Zhang F, Zheng Y and Zhao C (2012) Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing. Plant Physiology 159, 721-738. http://www.plantphysiol.org/cgi/content/abstract/159/2/721

te Beest M, Le Roux JJ, Richardson DM, Brysting AK, Suda J, Kubesova M and Pysek P (2012) The more the better? The role of polyploidy in facilitating plant invasions. Ann. Bot. 109, 19-45. http://aob.oxfordjournals.org/cgi/content/abstract/109/1/19

te Beest M, Le Roux JJ, Richardson DM, Brysting AK, Suda J, Kubesova M and Pysek P (2012) Subject Index

The more the better? The role of polyploidy in facilitating plant invasions. Cold Spring Harb Symp Quant Biol 77, 322-328. http://symposium.cshlp.org

http://aob.oxfordjournals.org/cgi/content/abstract/109/1/19

Thangasamy S, Chen P-W, Lai M-H, Chen J and Jauh G-Y (2012) Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters. The Plant Journal 71, 288-302. http://dx.doi.org/10.1111/j.1365-313X.2012.04989.x

Thole V, Peraldi A, Worland B, Nicholson P, Doonan JH and Vain P (2012) T-DNA mutagenesis in Brachypodium distachyon. J. Exp. Bot. 63, 567-576. http://jxb.oxfordjournals.org/cgi/content/abstract/63/2/567

Thole V and Vain P (2012) Agrobacterium-mediated transformation of Brachypodium distachyon. Methods Mol Biol 847, 137-49.

Thomas J, Palusa SG, Prasad KVSK, Ali GS, Surabhi G-K, Ben-Hur A, Abdel-Ghany SE and Reddy ASN (2012) Identification of an intronic splicing regulatory element involved in auto-regulation of alternative splicing of SCL33 pre-mRNA. The Plant Journal 72, 935-946. http://dx.doi.org/10.1111/tpj.12004

Toole GA, Le Gall G, Colquhoun IJ, Drea S, Opanowicz M, Bedő Z, Shewry PR and Mills ENC (2012) Spectroscopic analysis of diversity in the spatial distribution of arabinoxylan structures in endosperm cell walls of cereal species in the HEALTHGRAIN diversity collection. Journal of Cereal Science 56, 134-141. http://www.sciencedirect.com/science/article/pii/S0733521012000896

Trapero A, Ahrazem O, Rubio-Moraga A, Jimeno ML, Gomez MD and Gomez-Gomez L (2012) Characterization of a Glucosyltransferase Enzyme Involved in the Formation of Kaempferol and Quercetin Sophorosides in Crocus sativus. Plant Physiology 159, 1335-1354. http://www.plantphysiol.org/cgi/content/abstract/159/4/1335

Travnicek P, Jersakova J, et al. (2012) Minority cytotypes in European populations of the Gymnadenia conopsea complex (Orchidaceae) greatly increase intraspecific and intrapopulation diversity. Ann. Bot. 110, 977-986. http://aob.oxfordjournals.org/cgi/content/abstract/110/5/977

Tresch S, Heilmann M, Christiansen N, Looser R and Grossmann K (2012) Inhibition of saturated very-long-chain fatty acid biosynthesis by mefluidide and perfluidone, selective inhibitors of 3-ketoacyl-CoA synthases. Phytochemistry 76, 162-171. http://www.sciencedirect.com/science/article/pii/S0031942212000040

Tripathi P, Rabara R, et al. (2012) The WRKY transcription factor family in brachypodium distachyon. BMC Genomics 13, 270.

Urbański DF, Małolepszy A, Stougaard J and Andersen SU (2012) Genome-wide LORE1 retrotransposon mutagenesis and high-throughput insertion detection in Lotus japonicus. The Plant Journal 69, 731-741. http://dx.doi.org/10.1111/j.1365-313X.2011.04827.x

Van Bel M, Proost S, Wischnitzki E, Movahedi S, Scheerlinck C, Van de Peer Y and Vandepoele K (2012) ContentSnapshots

Dissecting Plant Genomes with the PLAZA Comparative Genomics Platform. Ann. Bot. 109, i-. http://aob.oxfordjournals.org

http://www.plantphysiol.org/cgi/content/abstract/158/2/590

Van Bel M, Proost S, Wischnitzki E, Movahedi S, Scheerlinck C, Van de Peer Y and Vandepoele K (2012) Dissecting Plant Genomes with the PLAZA Comparative Genomics Platform. Plant Physiology 158, 590-600. http://www.plantphysiol.org/cgi/content/abstract/158/2/590

Vázquez-Limón C, Hoogewijs D, Vinogradov SN and Arredondo-Peter R (2012) The evolution of land plant hemoglobins. Plant Science 191–192, 71-81. http://www.sciencedirect.com/science/article/pii/S0168945212000866

Vázquez-Lobo A, Roujol D, Zuñiga-Sánchez E, Albenne C, Piñero D, Buen AGd and Jamet E (2012) The highly conserved spermatophyte cell wall DUF642 protein family: Phylogeny and first evidence of interaction with cell wall polysaccharides in vitro. Molecular Phylogenetics and Evolution 63, 510-520. http://www.sciencedirect.com/science/article/pii/S1055790312000425

Vega-Sanchez ME, Verhertbruggen Y, et al. (2012) Loss of Cellulose Synthase-Like F6 Function Affects Mixed-Linkage Glucan Deposition, Cell Wall Mechanical Properties, and Defense Responses in Vegetative Tissues of Rice. Plant Physiology 159, 56-69. http://www.plantphysiol.org/cgi/content/abstract/159/1/56

Villagarcia H, Morin A-C, Shpak ED and Khodakovskaya MV (2012) Modification of tomato growth by expression of truncated ERECTA protein from Arabidopsis thaliana. J. Exp. Bot. 63, 6493-6504. http://jxb.oxfordjournals.org/cgi/content/abstract/63/18/6493

Voegele A, Graeber K, Oracz K, Tarkowska D, Jacquemoud D, Tureckova V, Urbanova T, Strnad M and Leubner-Metzger G (2012) Embryo growth, testa permeability, and endosperm weakening are major targets for the environmentally regulated inhibition of Lepidium sativum seed germination by myrigalone A. J. Exp. Bot. 63, 5337-5350. http://jxb.oxfordjournals.org/cgi/content/abstract/63/14/5337

Voll LM, Zell MB, Engelsdorf T, Saur A, Wheeler MG, Drincovich MF, Weber APM and Maurino VG (2012) Loss of cytosolic NADP-malic enzyme 2 in Arabidopsis thaliana is associated with enhanced susceptibility to Colletotrichum higginsianum. New Phytologist 195, 189-202. http://dx.doi.org/10.1111/j.1469-8137.2012.04129.x

Wang B, Dong M, Chen W, Liu X, Feng R and Xu T (2012) Microarray identification of conserved microRNAs in Pinellia pedatisecta. Gene 498, 36-40. http://www.sciencedirect.com/science/article/pii/S037811191200131X

Wang D, Rousseau-Gueutin M and Timmis JN (2012) Plastid Sequences Contribute to Some Plant Mitochondrial Genes. Mol. Biol. Evol. 29, 1707-1711. http://mbe.oxfordjournals.org/cgi/content/abstract/29/7/1707

Wang F, Vandepoele K and Van Lijsebettens M (2012) Tetraspanin genes in plants. Plant Science 190, 9-15. http://www.sciencedirect.com/science/article/pii/S0168945212000593

Wang H and Bennetzen JL (2012) Centromere retention and loss during the descent of maize from a tetraploid ancestor. PNAS 109, 21004-21009. http://www.pnas.org/cgi/content/abstract/109/51/21004

Wang HW, Hwang S-G, Karuppanapandian T, Liu A, Kim W and Jang CS (2012) Insight into the Molecular Evolution of Non-Specific Lipid Transfer Proteins via Comparative Analysis Between Rice and Sorghum. DNA Res 19, 179-194. http://dnaresearch.oxfordjournals.org/cgi/content/abstract/19/2/179

Wang M, Zou H, Lin Z, Wu Y, Chen X and Yuan Y (2012) Expressed sequence tag-PCR markers for identification of alien barley chromosome 2H in wheat. Genet Mol Res 11, 3452-63.

Wang Q and Dooner HK (2012) Dynamic evolution of bz orthologous regions in the Andropogoneae and other grasses. The Plant Journal, no-no. http://dx.doi.org/10.1111/j.1365-313X.2012.05059.x

Wang Q and Dooner HK (2012) Dynamic evolution of bz orthologous regions in the Andropogoneae and other grasses. The Plant Journal 72, 212-221. http://dx.doi.org/10.1111/j.1365-313X.2012.05059.x

Wang Q, Hillwig ML, Wu Y and Peters RJ (2012) CYP701A8: A Rice ent-Kaurene Oxidase Paralog Diverted to More Specialized Diterpenoid Metabolism. Plant Physiology 158, 1418-1425. http://www.plantphysiol.org/cgi/content/abstract/158/3/1418

Wang S, Wang K, et al. (2012) Molecular characterization of LMW-GS genes in Brachypodium distachyon L. reveals highly conserved Glu-3 loci in Triticum and related species. BMC Plant Biol 12, 221.

Wang Y, Tang H, et al. (2012) MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res. 40, e49-. http://nar.oxfordjournals.org/cgi/content/abstract/40/7/e49

Wang Y, Xu W, Zhao W, Hao J, Luo Y, Tang X, Zhang Y and Huang K (2012) Comparative analysis of the proteomic and nutritional composition of transgenic rice seeds with Cry1ab/ac genes and their non-transgenic counterparts. Journal of Cereal Science 55, 226-233. http://www.sciencedirect.com/science/article/pii/S0733521012000033

Wang Z, Hobson N, et al. (2012) The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads. The Plant Journal, no-no. http://dx.doi.org/10.1111/j.1365-313X.2012.05093.x

Wang Z, Hobson N, et al. (2012) The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads. The Plant Journal 72, 461-473. http://dx.doi.org/10.1111/j.1365-313X.2012.05093.x

Waters BM, McInturf SA and Stein RJ (2012) Rosette iron deficiency transcript and microRNA profiling reveals links between copper and iron homeostasis in Arabidopsis thaliana. J. Exp. Bot. 63, 5903-5918. http://jxb.oxfordjournals.org/cgi/content/abstract/63/16/5903

Wei Z-Z, Luo L-B, Zhang H-L, Xiong M, Wang X and Zhou D (2012) Identification and characterization of 43 novel polymorphic EST-SSR markers for arum lily, Zantedeschia aethiopica (Araceae). Am. J. Botany 99, e493-497. http://www.amjbot.org/cgi/content/abstract/99/12/e493

Weiss J, Mallona I, Gomez-di-Marco P, Fernández-Valera JM and Egea-Cortines M (2012) Genotyping Antirrhinum commercial varieties using miniature inverted-repeat transposable elements (MITEs). Scientia Horticulturae 144, 161-167. http://www.sciencedirect.com/science/article/pii/S0304423812003093

Weissmann S and Brutnell TP (2012) Engineering C4 photosynthetic regulatory networks. Current Opinion in Biotechnology 23, 298-304. http://www.sciencedirect.com/science/article/pii/S0958166911007610

Wen R, Moore G and Shaw P (2012) Centromeres cluster de novo at the beginning of meiosis in Brachypodium distachyon. PLoS One 7, e44681.

Williams BP, Aubry S and Hibberd JM (2012) Molecular evolution of genes recruited into C4 photosynthesis. Trends in Plant Science 17, 213-220. http://www.sciencedirect.com/science/article/pii/S136013851200009X

Withers S, Lu F, Kim H, Zhu Y, Ralph J and Wilkerson CG (2012) Identification of Grass-specific Enzyme That Acylates Monolignols with p-Coumarate. J. Biol. Chem. 287, 8347-8355. http://www.jbc.org/cgi/content/abstract/287/11/8347

Wu C and Chen JM (2012) The use of precipitation intensity in estimating gross primary production in four northern grasslands. Journal of Arid Environments 82, 11-18. http://www.sciencedirect.com/science/article/pii/S0140196312000948

Wu Y, Li X, et al. (2012) Presence of tannins in sorghum grains is conditioned by different natural alleles of Tannin1. PNAS 109, 10281-10286. http://www.pnas.org/cgi/content/abstract/109/26/10281

Wu Z-Q and Ge S (2012) The phylogeny of the BEP clade in grasses revisited: Evidence from the whole-genome sequences of chloroplasts. Molecular Phylogenetics and Evolution 62, 573-578. http://www.sciencedirect.com/science/article/pii/S1055790311004519

Xu J, Liu Y, et al. (2012) The Genetic Architecture of Flowering Time and Photoperiod Sensitivity in Maize as Revealed by QTL Review and Meta Analysis. Journal of Integrative Plant Biology 54, 358-373. http://dx.doi.org/10.1111/j.1744-7909.2012.01128.x

Xu J-H, Bennetzen JL and Messing J (2012) Dynamic Gene Copy Number Variation in Collinear Regions of Grass Genomes. Mol. Biol. Evol. 29, 861-871. http://mbe.oxfordjournals.org/cgi/content/abstract/29/2/861

Xue F, Ji W, Wang C, Zhang H and Yang B (2012) High-density mapping and marker development for the powdery mildew resistance gene PmAS846 derived from wild emmer wheat (Triticum turgidum var. dicoccoides). Theor Appl Genet 124, 1549-60.

Xue F, Ji W, Wang C, Zhang H and Yang B (2012) High-density mapping and marker development for the powdery mildew resistance gene PmAS846 derived from wild emmer wheat (Triticum turgidum var. dicoccoides). Theoretical and applied genetics TAG. 124, 1549-1560. http://dx.doi.org/10.1007/s00122-012-1809-7

Xue Z, Duan L, Liu D, Guo J, Ge S, Dicks J, ÓMáille P, Osbourn A and Qi X (2012) Divergent evolution of oxidosqualene cyclases in plants. New phytologist. 193, 1022-1038. http://dx.doi.org/10.1111/j.1469-8137.2011.03997.x

Xue Z, Duan L, Liu D, Guo J, Ge S, Dicks J, OMaille P, Osbourn A and Qi X (2012) Divergent evolution of oxidosqualene cyclases in plants. New Phytol 193, 1022-38.

Xue Z, Duan L, Liu D, Guo J, Ge S, Dicks J, ÓMáille P, Osbourn A and Qi X (2012) Divergent evolution of oxidosqualene cyclases in plants. New Phytologist 193, 1022-1038. http://dx.doi.org/10.1111/j.1469-8137.2011.03997.x

Yagi Y, Ishizaki Y, Nakahira Y, Tozawa Y and Shiina T (2012) Eukaryotic-type plastid nucleoid protein pTAC3 is essential for transcription by the bacterial-type plastid RNA polymerase. PNAS 109, 7541-7546. http://www.pnas.org/cgi/content/abstract/109/19/7541

Yang L, Liu T, Li B, Sui Y, Chen J, Shi J, Wing R and Chen M (2012) Comparative sequence analysis of the ghd7 orthologous regions revealed movement of ghd7 in the grass genomes. PLoS One 7, e50236.

Yang S-Y, Gronlund M, et al. (2012) Nonredundant Regulation of Rice Arbuscular Mycorrhizal Symbiosis by Two Members of the PHOSPHATE TRANSPORTER1 Gene Family. PLANT CELL 24, 4236-4251. http://www.plantcell.org/cgi/content/abstract/24/10/4236

Yi S, Qian Y, Han L, Sun Z, Fan C, Liu J and Ju G (2012) Selection of reliable reference genes for gene expression studies in Rhododendron micranthum Turcz. Scientia Horticulturae 138, 128-133. http://www.sciencedirect.com/science/article/pii/S0304423812000787

Yuo T, Yamashita Y, Kanamori H, Matsumoto T, Lundqvist U, Sato K, Ichii M, Jobling SA and Taketa S (2012) A SHORT INTERNODES (SHI) family transcription factor gene regulates awn elongation and pistil morphology in barley. J. Exp. Bot. 63, 5223-5232. http://jxb.oxfordjournals.org/cgi/content/abstract/63/14/5223

Zakhrabekova S, Gough SP, et al. (2012) Induced mutations in circadian clock regulator Mat-a facilitated short-season adaptation and range extension in cultivated barley. PNAS 109, 4326-4331. http://www.pnas.org/cgi/content/abstract/109/11/4326

Zapiola ML and Mallory-Smith CA (2012) Crossing the divide: gene flow produces intergeneric hybrid in feral transgenic creeping bentgrass population. Molecular Ecology, no-no. http://dx.doi.org/10.1111/j.1365-294X.2012.05627.x

Zapiola ML and Mallory-Smith CA (2012) Crossing the divide: gene flow produces intergeneric hybrid in feral transgenic creeping bentgrass population. Molecular Ecology 21, 4672-4680. http://dx.doi.org/10.1111/j.1365-294X.2012.05627.x

Zhang C, Song Y, Cheng Z-h, Wang Y-x, Zhu J, Ma H, Xu L and Yang Z-N (2012) The Arabidopsis thaliana DSB formation (AtDFO) gene is required for meiotic double-strand break formation. The Plant Journal, no-no. http://dx.doi.org/10.1111/j.1365-313X.2012.05075.x

Zhang C, Song Y, Cheng Z-h, Wang Y-x, Zhu J, Ma H, Xu L and Yang Z-N (2012) The Arabidopsis thaliana DSB formation (AtDFO) gene is required for meiotic double-strand break formation. The Plant Journal 72, 271-281. http://dx.doi.org/10.1111/j.1365-313X.2012.05075.x

Zhang C-C, Yuan W-Y and Zhang Q-F (2012) RPL1, a Gene Involved in Epigenetic Processes Regulates Phenotypic Plasticity in Rice. Mol Plant 5, 482-493. http://mplant.oxfordjournals.org/cgi/content/abstract/5/2/482

Zhang L, Zhao G, Jia J, Liu X and Kong X (2012) Molecular characterization of 60 isolated wheat MYB genes and analysis of their expression during abiotic stress. J. Exp. Bot. 63, 203-214. http://jxb.oxfordjournals.org/cgi/content/abstract/63/1/203

Zhang L, Zhao G, Jia J, Liu X and Kong X (2012) ContentSnapshots

Molecular characterization of 60 isolated wheat MYB genes and analysis of their expression during abiotic stress. Ann. Bot. 109, i-. http://aob.oxfordjournals.org

http://jxb.oxfordjournals.org/cgi/content/abstract/63/1/203

Zhang N, Zeng L, Shan H and Ma H (2012) Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms. New Phytologist 195, 923-937. http://dx.doi.org/10.1111/j.1469-8137.2012.04212.x

Zhang X, Wang J, et al. (2012) Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice. PNAS 109, 21534-21539. http://www.pnas.org/cgi/content/abstract/109/52/21534

Zhou M-L, Zhang Q, Zhou M, Sun Z-M, Zhu X-M, Shao J-R, Tang Y-X and Wu Y-M (2012) Genome-wide identification of genes involved in raffinose metabolism in Maize. Glycobiology 22, 1775-1785. http://glycob.oxfordjournals.org/cgi/content/abstract/22/12/1775

Zhu H and Kranz RG (2012) A Nitrogen-Regulated Glutamine Amidotransferase (GAT1_2.1) Represses Shoot Branching in Arabidopsis. Plant Physiology 160, 1770-1780. http://www.plantphysiol.org/cgi/content/abstract/160/4/1770

Zhuang X, Köllner TG, Zhao N, Li G, Jiang Y, Zhu L, Ma J, Degenhardt J and Chen F (2012) Dynamic evolution of herbivore-induced sesquiterpene biosynthesis in sorghum and related grass crops. The Plant Journal 69, 70-80. http://dx.doi.org/10.1111/j.1365-313X.2011.04771.x

(2011) Editorial. Journal of Cereal Science 54, 265. http://www.sciencedirect.com/science/article/pii/S0733521011001305

 

 

References 1901-2013 (and links to abstracts):
[Number of papers mentioning Brachypodium distachyon: 1204; Any undated papers have been included at the end]

 

Anonymous (2013) Contents. Procedia Environmental Sciences 19, iii-vi. http://www.sciencedirect.com/science/article/pii/S1878029613003812

Anonymous (2013) Index. In ‘Plant Centromere Biology’. (Ed.^(Eds  pp. 193-210. (Wiley-Blackwell). http://dx.doi.org/10.1002/9781118525715.index

Anonymous (2013) Contents: Proteomics 13’16. PROTEOMICS 13, NA-NA. http://dx.doi.org/10.1002/pmic.201370133

Anonymous (2013) Cover Caption: Vernalization-Related Genes in Brachypodium. Journal of Integrative Plant Biology 55, 681-. http://dx.doi.org/10.1111/jipb.12093

Acevedo RM, Maiale SJ, Pessino SC, Bottini R, Ruiz OA and Sansberro PA (2013) A succinate dehydrogenase flavoprotein subunit-like transcript is upregulated in Ilex paraguariensis leaves in response to water deficit and abscisic acid. Plant Physiology and Biochemistry 65, 48-54. http://www.sciencedirect.com/science/article/pii/S0981942813000065

Adamski NM, Bush MS, et al. (2013) The Inhibitor of wax 1 locus (Iw1) prevents formation of β- and OH-β-diketones in wheat cuticular waxes and maps to a sub-cM interval on chromosome arm 2BS. The Plant Journal 74, 989-1002. http://dx.doi.org/10.1111/tpj.12185

Agrawal GK, Sarkar A, et al. (2013) A decade of plant proteomics and mass spectrometry: Translation of technical advancements to food security and safety issues. Mass Spectrometry Reviews 32, 335-65. http://dx.doi.org/10.1002/mas.21365

Akhunov ED, Sehgal S, et al. (2013) Comparative Analysis of Syntenic Genes in Grass Genomes Reveals Accelerated Rates of Gene Structure and Coding Sequence Evolution in Polyploid Wheat. Plant Physiology 161, 252-65. http://www.plantphysiol.org/cgi/content/abstract/161/1/252

Arikit S, Zhai J and Meyers BC (2013) Biogenesis and function of rice small RNAs from non-coding RNA precursors. Current Opinion in Plant Biology 16, 170-9. http://www.sciencedirect.com/science/article/pii/S1369526613000186

Ashikawa I, Abe F and Nakamura S (2013) DOG1-like genes in cereals: Investigation of their function by means of ectopic expression in Arabidopsis. Plant Science 208, 1-9. http://www.sciencedirect.com/science/article/pii/S0168945213000678

Atwell S and Kliebenstein DJ (2013) Conducting Genome-Wide Association Mapping of Metabolites. In ‘The Handbook of Plant Metabolomics’. (Ed.^(Eds  pp. 255-71. (Wiley-VCH Verlag GmbH & Co. KGaA). http://dx.doi.org/10.1002/9783527669882.ch14

Balmer D, Planchamp C and Mauch-Mani B (2013) On the move: induced resistance in monocots. J. Exp. Bot. 64, 1249-61. http://jxb.oxfordjournals.org/cgi/content/abstract/64/5/1249

Bartley LE, Peck ML, et al. (2013) Overexpression of a BAHD Acyltransferase, OsAt10, Alters Rice Cell Wall Hydroxycinnamic Acid Content and Saccharification. Plant Physiology 161, 1615-33. http://www.plantphysiol.org/cgi/content/abstract/161/4/1615

Benavente E, García-Toledano L, Carrillo JM and Quemada M (2013) Thermographic Imaging: Assessment of Drought and Heat Tolerance in Spanish Germplasm of Brachypodium Distachyon. Procedia Environmental Sciences 19, 262-6. http://www.sciencedirect.com/science/article/pii/S1878029613003009

Bennett MD and Leitch IJ (2013) CORRECTIONS

Nuclear DNA amounts in angiosperms: targets, trends and tomorrow. Plant Physiology 161, 2181-2. http://www.plantphysiol.org

http://aob.oxfordjournals.org/cgi/content/abstract/107/3/467

Berkman PJ, Visendi P, et al. (2013) Dispersion and domestication shaped the genome of bread wheat. Plant Biotechnology Journal 11, 564-71. http://dx.doi.org/10.1111/pbi.12044

Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME and Mica E (2013) Addressing the Role of microRNAs in Reprogramming Leaf Growth during Drought Stress in Brachypodium distachyon. Mol Plant 6, 423-43. http://mplant.oxfordjournals.org/cgi/content/abstract/6/2/423

Besnard G, Christin P-A, Male P-JG, Coissac E, Ralimanana H and Vorontsova MS (2013) Phylogenomics and taxonomy of Lecomtelleae (Poaceae), an isolated panicoid lineage from Madagascar. Ann. Bot., mct174. http://aob.oxfordjournals.org/cgi/content/abstract/mct174v1

Bouvier d’Yvoire M, Bouchabke-Coussa O, et al. (2013) Disrupting the cinnamyl alcohol dehydrogenase 1 gene (BdCAD1) leads to altered lignification and improved saccharification in Brachypodium distachyon. The Plant Journal 73, 496-508. http://dx.doi.org/10.1111/tpj.12053

Brand LH, Fischer NM, Harter K, Kohlbacher O and Wanke D (2013) Elucidating the evolutionary conserved DNA-binding specificities of WRKY transcription factors by molecular dynamics and in vitro binding assays. Nucleic Acids Res., gkt732. http://nar.oxfordjournals.org/cgi/content/abstract/gkt732v1

Bromley JR, Busse-Wicher M, Tryfona T, Mortimer JC, Zhang Z, Brown DM and Dupree P (2013) GUX1 and GUX2 glucuronyltransferases decorate distinct domains of glucuronoxylan with different substitution patterns. The Plant Journal 74, 423-34. http://dx.doi.org/10.1111/tpj.12135

Calvino M and Messing J (2013) Discovery of MicroRNA169 Gene Copies in Genomes of Flowering Plants through Positional Information. Genome Biol Evol 5, 402-17. http://gbe.oxfordjournals.org/cgi/content/abstract/5/2/402

Campoli C, Pankin A, Drosse B, Casao CM, Davis SJ and von Korff M (2013) HvLUX1 is a candidate gene underlying the early maturity 10 locus in barley: phylogeny, diversity, and interactions with the circadian clock and photoperiodic pathways. New Phytologist 199, 1045-59. http://dx.doi.org/10.1111/nph.12346

Carretero-Paulet L, Cairó A, Talavera D, Saura A, Imperial S, Rodríguez-Concepción M, Campos N and Boronat A (2013) Functional and evolutionary analysis of DXL1, a non-essential gene encoding a 1-deoxy-D-xylulose 5-phosphate synthase like protein in Arabidopsis thaliana. Gene 524, 40-53. http://www.sciencedirect.com/science/article/pii/S0378111912013558

Cavanagh CR, Chao S, et al. (2013) Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars. PNAS 110, 8057-62. http://www.pnas.org/cgi/content/abstract/110/20/8057

Chaffey N (2013) Plant Cuttings. Ann. Bot. 112, iii-. http://aob.oxfordjournals.org

Challis RJ, Hepworth J, Mouchel C, Waites R and Leyser O (2013) A Role for MORE AXILLARY GROWTH1 (MAX1) in Evolutionary Diversity in Strigolactone Signaling Upstream of MAX2. Plant Physiology 161, 1885-902. http://www.plantphysiol.org/cgi/content/abstract/161/4/1885

Champagne A and Boutry M (2013) Proteomics of nonmodel plant species. PROTEOMICS 13, 663-73. http://dx.doi.org/10.1002/pmic.201200312

Chang Y-M, Chang C-L, Li W-H and Shih AC-C (2013) Historical profiling of maize duplicate genes sheds light on the evolution of C4 photosynthesis in grasses. Molecular Phylogenetics and Evolution 66, 453-62. http://www.sciencedirect.com/science/article/pii/S1055790312003181

Chen C, Chen H, Shan J-X, Zhu M-Z, Shi M, Gao J-P and Lin H-X (2013) Genetic and Physiological Analysis of a Novel Type of Interspecific Hybrid Weakness in Rice. Mol Plant 6, 716-28. http://mplant.oxfordjournals.org/cgi/content/abstract/6/3/716

Chen Y-E, Zhao Z-Y, Zhang H-Y, Zeng X-Y and Yuan S (2013) The significance of CP29 reversible phosphorylation in thylakoids of higher plants under environmental stresses. J. Exp. Bot. 64, 1167-78. http://jxb.oxfordjournals.org/cgi/content/abstract/64/5/1167

Cheng L, Li X, et al. (2013) Overexpression of sheepgrass R1-MYB transcription factor LcMYB1 confers salt tolerance in transgenic Arabidopsis. Plant Physiology and Biochemistry 70, 252-60. http://www.sciencedirect.com/science/article/pii/S098194281300199X

Cheng X, Chen W, Zhou Z, Liu J and Wang H (2013) Functional characterization of a novel tropinone reductase-like gene in Dendrobium nobile Lindl. Journal of Plant Physiology 170, 958-64. http://www.sciencedirect.com/science/article/pii/S0176161713001028

Cognat V, Pawlak G, et al. (2013) PlantRNA, a database for tRNAs of photosynthetic eukaryotes. Nucleic Acids Res. 41, D273-9. http://nar.oxfordjournals.org/cgi/content/abstract/41/D1/D273

Colquhoun TA, Schwieterman ML, et al. (2013) Light modulation of volatile organic compounds from petunia flowers and select fruits. Postharvest Biology and Technology 86, 37-44. http://www.sciencedirect.com/science/article/pii/S0925521413001695

Cray JA, Bell ANW, Bhaganna P, Mswaka AY, Timson DJ and Hallsworth JE (2013) The biology of habitat dominance; can microbes behave as weeds? Microbial Biotechnology 6, 453-92. http://dx.doi.org/10.1111/1751-7915.12027

Cseh A, Soós V, Rakszegi M, Türkösi E, Balázs E and Molnár-Láng M (2013) Expression of HvCslF9 and HvCslF6 barley genes in the genetic background of wheat and their influence on the wheat β-glucan content. Annals of Applied Biology 163, 142-50. http://dx.doi.org/10.1111/aab.12043

Dangwal M, Malik G, Kapoor S and Kapoor M (2013) De Novo Methyltransferase, OsDRM2, Interacts with the ATP-Dependent RNA Helicase, OseIF4A, in Rice. Journal of Molecular Biology 425, 2853-66. http://www.sciencedirect.com/science/article/pii/S0022283613003355

Délye C (2013) Unravelling the genetic bases of non-target-site-based resistance (NTSR) to herbicides: a major challenge for weed science in the forthcoming decade. Pest Management Science 69, 176-87. http://dx.doi.org/10.1002/ps.3318

Derbyshire P and Byrne ME (2013) MORE SPIKELETS1 Is Required for Spikelet Fate in the Inflorescence of Brachypodium. Plant Physiology 161, 1291-302. http://www.plantphysiol.org/cgi/content/abstract/161/3/1291

Dickens SJM, Allen EB, Santiago LS and Crowley D (2013) Exotic annuals reduce soil heterogeneity in coastal sage scrub soil chemical and biological characteristics. Soil Biology and Biochemistry 58, 70-81. http://www.sciencedirect.com/science/article/pii/S0038071712003768

Ding Y, Tao Y and Zhu C (2013) Emerging roles of microRNAs in the mediation of drought stress response in plants. J. Exp. Bot. 64, 3077-86. http://jxb.oxfordjournals.org/cgi/content/abstract/64/11/3077

Dmochowska-Boguta M, Nadolska-Orczyk A and Orczyk W (2013) Roles of peroxidases and NADPH oxidases in the oxidative response of wheat (Triticum aestivum) to brown rust (Puccinia triticina) infection. Plant Pathology 62, 993-1002. http://dx.doi.org/10.1111/ppa.12009

Doblas VG, Amorim-Silva V, et al. (2013) The SUD1 Gene Encodes a Putative E3 Ubiquitin Ligase and Is a Positive Regulator of 3-Hydroxy-3-Methylglutaryl Coenzyme A Reductase Activity in Arabidopsis. PLANT CELL 25, 728-43. http://www.plantcell.org/cgi/content/abstract/25/2/728

Domon J-M, Baldwin L, et al. (2013) Cell wall compositional modifications of Miscanthus ecotypes in response to cold acclimation. Phytochemistry 85, 51-61. http://www.sciencedirect.com/science/article/pii/S0031942212003937

Dong L, Ishak A, Yu J, Zhao R and Zhao L (2013) Identification and Functional Analysis of Three MAX2 Orthologs in Chrysanthemum. Journal of Integrative Plant Biology 55, 434-42. http://dx.doi.org/10.1111/jipb.12028

Dong X, Wang X, et al. (2013) Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice. Plant Biotechnology Journal, n/a-n/a. http://dx.doi.org/10.1111/pbi.12097

Douché T, Clemente HS, Burlat V, Roujol D, Valot B, Zivy M, Pont-Lezica R and Jamet E (2013) Brachypodium distachyon as a model plant toward improved biofuel crops: Search for secreted proteins involved in biogenesis and disassembly of cell wall polymers. PROTEOMICS 13, 2438-54. http://dx.doi.org/10.1002/pmic.201200507

Downs GS, Bi Y-M, Colasanti J, Wu W, Chen X, Zhu T, Rothstein SJ and Lukens LN (2013) A Developmental Transcriptional Network for Maize Defines Coexpression Modules. Plant Physiology 161, 1830-43. http://www.plantphysiol.org/cgi/content/abstract/161/4/1830

Dreni L, Osnato M and Kater MM (2013) The Ins and Outs of the Rice AGAMOUS Subfamily. Mol Plant 6, 650-64. http://mplant.oxfordjournals.org/cgi/content/abstract/6/3/650

Du H, Wang Y-B, Xie Y, Liang Z, Jiang S-J, Zhang S-S, Huang Y-B and Tang Y-X (2013) Genome-Wide Identification and Evolutionary and Expression Analyses of MYB-Related Genes in Land Plants. DNA Res, dst021. http://dnaresearch.oxfordjournals.org/cgi/content/abstract/dst021v1

Duan X, Wang X, Fu Y, Tang C, Li X, Cheng Y, Feng H, Huang L and Kang Z (2013) TaEIL1, a wheat homologue of AtEIN3, acts as a negative regulator in the wheat–stripe rust fungus interaction. Molecular Plant Pathology 14, 728-39. http://dx.doi.org/10.1111/mpp.12044

Dvorak J (2013) Triticum Species (Wheat). In ‘Brenner’s Encyclopedia of Genetics (Second Edition)’. (Ed.^(Eds M Editors-in-Chief: Stanley and H Kelly) pp. 198-202. (Academic Press: San Diego). http://www.sciencedirect.com/science/article/pii/B9780123749840015850

Dwiyanti MS, Stewart JR and Yamada T (2013) Germplasm Resources of Miscanthus and Their Application in Breeding. In ‘Bioenergy Feedstocks’. (Ed.^(Eds  pp. 49-66. (John Wiley & Sons, Inc.). http://dx.doi.org/10.1002/9781118609477.ch4

El Baidouri M and Panaud O (2013) Comparative Genomic Paleontology across Plant Kingdom Reveals the Dynamics of TE-Driven Genome Evolution. Genome Biol Evol 5, 954-65. http://gbe.oxfordjournals.org/cgi/content/abstract/5/5/954

Finet C, Berne-Dedieu A, Scutt CP and Marletaz F (2013) Evolution of the ARF Gene Family in Land Plants: Old Domains, New Tricks. Mol. Biol. Evol. 30, 45-56. http://mbe.oxfordjournals.org/cgi/content/abstract/30/1/45

Gagne-Bourgue F, Aliferis KA, Seguin P, Rani M, Samson R and Jabaji S (2013) Isolation and characterization of indigenous endophytic bacteria associated with leaves of switchgrass (Panicum virgatum L.) cultivars. Journal of Applied Microbiology 114, 836-53. http://dx.doi.org/10.1111/jam.12088

Gandía-Herrero F and García-Carmona F (2013) Biosynthesis of betalains: yellow and violet plant pigments. Trends in Plant Science 18, 334-43. http://www.sciencedirect.com/science/article/pii/S1360138513000046

Ge A, Shangguan L, Zhang X, Dong Q, Han J, Liu H, Wang X and Fang J (2013) Deep sequencing discovery of novel and conserved microRNAs in strawberry (Fragaria×ananassa). Physiologia Plantarum 148, 387-96. http://dx.doi.org/10.1111/j.1399-3054.2012.01713.x

Geng S, Li A, et al. (2013) TaCPK2-A, a calcium-dependent protein kinase gene that is required for wheat powdery mildew resistance enhances bacterial blight resistance in transgenic rice. J. Exp. Bot. 64, 3125-36. http://jxb.oxfordjournals.org/cgi/content/abstract/64/11/3125

Gerotto C and Morosinotto T (2013) Evolution of photoprotection mechanisms upon land colonization: evidence of PSBS-dependent NPQ in late Streptophyte algae. Physiologia Plantarum, n/a-n/a. http://dx.doi.org/10.1111/ppl.12070

Godsoe W, Larson MA, Glennon KL and Segraves KA (2013) Polyploidization in Heuchera cylindrica (Saxifragaceae) did not result in a shift in climatic requirements. Am. J. Botany 100, 496-508. http://www.amjbot.org/cgi/content/abstract/100/3/496

Golodets C, Kigel J, Sapir Y and Sternberg M (2013) Quantitative vs qualitative vegetation sampling methods: a lesson from a grazing experiment in a Mediterranean grassland. Applied Vegetation Science 16, 502-8. http://dx.doi.org/10.1111/avsc.12005

Gu R, Duan F, An X, Zhang F, von Wiren N and Yuan L (2013) Characterization of AMT-Mediated High-Affinity Ammonium Uptake in Roots of Maize (Zea mays L.). Plant Cell Physiol. 54, 1515-24. http://pcp.oxfordjournals.org/cgi/content/abstract/54/9/1515

Hamberger B and Bak S (2013) Plant P450s as versatile drivers for evolution of species-specific chemical diversity. Phil Trans R Soc B 368, 20120426-. http://rstb.royalsocietypublishing.org/cgi/content/abstract/368/1612/20120426

Han Q, Kang G and Guo T (2013) Proteomic analysis of spring freeze-stress responsive proteins in leaves of bread wheat (Triticum aestivum L.). Plant Physiology and Biochemistry 63, 236-44. http://www.sciencedirect.com/science/article/pii/S098194281200349X

Han X, Tang S, An Y, Zheng D-C, Xia X-L and Yin W-L (2013) Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., ert262. http://jxb.oxfordjournals.org/cgi/content/abstract/ert262v1

Hanada K, Higuchi-Takeuchi M, et al. (2013) Small open reading frames associated with morphogenesis are hidden in plant genomes. PNAS 110, 2395-400. http://www.pnas.org/cgi/content/abstract/110/6/2395

Hand ML, Spangenberg GC, Forster JW and Cogan NOI (2013) Plastome Sequence Determination and Comparative Analysis for Members of the Lolium-Festuca Grass Species Complex. g3 3, 607-16. http://www.g3journal.org/cgi/content/abstract/3/4/607

Hao G-Y, Lucero ME, Sanderson SC, Zacharias EH and Holbrook NM (2013) Polyploidy enhances the occupation of heterogeneous environments through hydraulic related trade-offs in Atriplex canescens (Chenopodiaceae). New Phytologist 197, 970-8. http://dx.doi.org/10.1111/nph.12051

Hara M, Kondo M and Kato T (2013) A KS-type dehydrin and its related domains reduce Cu-promoted radical generation and the histidine residues contribute to the radical-reducing activities. J. Exp. Bot. 64, 1615-24. http://jxb.oxfordjournals.org/cgi/content/abstract/64/6/1615

Harashima H, Dissmeyer N and Schnittger A (2013) Cell cycle control across the eukaryotic kingdom. Trends in Cell Biology 23, 345-56. http://www.sciencedirect.com/science/article/pii/S0962892413000469

Harsant J, Pavlovic L, Chiu G, Sultmanis S and Sage TL (2013) High temperature stress and its effect on pollen development and morphological components of harvest index in the C3 model grass Brachypodium distachyon. J. Exp. Bot., ert142. http://jxb.oxfordjournals.org/cgi/content/abstract/ert142v1

Hayes BJ, Cogan NOI, Pembleton LW, Goddard ME, Wang J, Spangenberg GC and Forster JW (2013) Prospects for genomic selection in forage plant species. Plant Breeding 132, 133-43. http://dx.doi.org/10.1111/pbr.12037

He B, Huang X, Li D, Jiang C, Yu T, Yin F, Li W and Cheng Z (2013) The cDNA cloning of a novel bacterial blight-resistance gene ME137. Acta Biochim Biophys Sin 45, 422-4. http://abbs.oxfordjournals.org

He H, Zhu S, Sun W, Gao D and Bie T (2013) Efficient development of Haynaldia villosa chromosome 6VS-specific DNA markers using a CISP-IS strategy. Plant Breeding 132, 290-4. http://dx.doi.org/10.1111/pbr.12035

Hill CB and Roessner U (2013) Metabolic Profiling of Plants by GC–MS. In ‘The Handbook of Plant Metabolomics’. (Ed.^(Eds  pp. 1-23. (Wiley-VCH Verlag GmbH & Co. KGaA). http://dx.doi.org/10.1002/9783527669882.ch1

Ho KK, Zhang H, Golden BL and Ogas J (2013) PICKLE is a CHD subfamily II ATP-dependent chromatin remodeling factor. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1829, 199-210. http://www.sciencedirect.com/science/article/pii/S1874939912001824

Hoang HH, Sotta B, Gendreau E, Bailly C, Leymarie J and Corbineau F (2013) Water content: a key factor of the induction of secondary dormancy in barley grains as related to ABA metabolism. Physiologia Plantarum 148, 284-96. http://dx.doi.org/10.1111/j.1399-3054.2012.01710.x

Hu J, Zhang H and Ding Y (2013) Identification of conserved microRNAs and their targets in the model legume Lotus japonicus. Journal of Biotechnology 164, 520-4. http://www.sciencedirect.com/science/article/pii/S016816561300062X

Hu WEI, Huang C, et al. (2013) TaASR1, a transcription factor gene in wheat, confers drought stress tolerance in transgenic tobacco. Plant, Cell & Environment 36, 1449-64. http://dx.doi.org/10.1111/pce.12074

Hu Y, Guo S, Li X and Ren X (2013) Comparative analysis of salt-responsive phosphoproteins in maize leaves using Ti4+-IMAC enrichment and ESI-Q-TOFMS. ELECTROPHORESIS 34, 485-92. http://dx.doi.org/10.1002/elps.201200381

Huan Q, Mao Z, Zhang J, Xu Y and Chong K (2013) Transcriptome-wide Analysis Of Vernalization Reveals Conserved and Species-specific Mechanisms in Brachypodium. Journal of Integrative Plant Biology 55, 696-709. http://dx.doi.org/10.1111/jipb.12050

Huang J, Qin F, Zang G, Kang Z, Zou H, Hu F, Yue C, Li X and Wang G (2013) Mutation of OsDET1 increases chlorophyll content in rice. Plant Science 210, 241-9. http://www.sciencedirect.com/science/article/pii/S0168945213001404

Hupalo D and Kern AD (2013) Conservation and Functional Element Discovery in 20 Angiosperm Plant Genomes. Mol. Biol. Evol. 30, 1729-44. http://mbe.oxfordjournals.org/cgi/content/abstract/30/7/1729

Irimia M, Maeso I, Roy SW and Fraser HB (2013) Ancient cis-regulatory constraints and the evolution of genome architecture. Trends in Genetics 29, 521-8. http://www.sciencedirect.com/science/article/pii/S0168952513000875

Itoh H and Izawa T (2013) The Coincidence of Critical Day Length Recognition for Florigen Gene Expression and Floral Transition under Long-Day Conditions in Rice. Mol Plant 6, 635-49. http://mplant.oxfordjournals.org/cgi/content/abstract/6/3/635

Jaime R, Serichol C, Alcántara JM and Rey PJ (2013) Differences in gas exchange contribute to habitat differentiation in Iberian columbines from contrasting light and water environments. Plant Biology, n/a-n/a. http://dx.doi.org/10.1111/plb.12064

Jansen L, Hollunder J, et al. (2013) Comparative transcriptomics as a tool for the identification of root branching genes in maize. Plant Biotechnology Journal, n/a-n/a. http://dx.doi.org/10.1111/pbi.12104

Jaunatre R, Buisson E, Muller I, Morlon H, Mesléard F and Dutoit T (2013) New synthetic indicators to assess community resilience and restoration success. Ecological Indicators 29, 468-77. http://www.sciencedirect.com/science/article/pii/S1470160X13000423

Jeffries EP, Denq WI, Bartko JC and Trakselis MA (2013) Identification, quantification, and evolutionary analysis of a novel isoform of MCM9. Gene 519, 41-9. http://www.sciencedirect.com/science/article/pii/S0378111913001273

Jiang T, Zhai H, Wang F, Yang N, Wang B, He S and Liu Q (2013) Cloning and characterization of a carbohydrate metabolism-associated gene IbSnRK1 from sweetpotato. Scientia Horticulturae 158, 22-32. http://www.sciencedirect.com/science/article/pii/S0304423813001969

Jiang W-k, Liu Y-l, Xia E-h and Gao L-z (2013) Prevalent Role of Gene Features in Determining Evolutionary Fates of Whole-Genome Duplication Duplicated Genes in Flowering Plants. Plant Physiology 161, 1844-61. http://www.plantphysiol.org/cgi/content/abstract/161/4/1844

Juenger TE (2013) Natural variation and genetic constraints on drought tolerance. Current Opinion in Plant Biology 16, 274-81. http://www.sciencedirect.com/science/article/pii/S1369526613000198

Kabała K, Janicka-Russak M, Reda M and Migocka M (2013) Transcriptional regulation of the V-ATPase subunit c and V-PPase isoforms in Cucumis sativus under heavy metal stress. Physiologia Plantarum, n/a-n/a. http://dx.doi.org/10.1111/ppl.12064

Kahloul S, HajSalah El Beji I, Boulaflous A, Ferchichi A, Kong H, Mouzeyar S and Bouzidi MF (2013) Structural, Expression and Interaction Analysis of Rice SKP1-Like Genes. DNA Res 20, 67-78. http://dnaresearch.oxfordjournals.org/cgi/content/abstract/20/1/67

Kang G, Li G, Ma H, Wang C and Guo T (2013) Proteomic analysis on the leaves of TaBTF3 gene virus-induced silenced wheat plants may reveal its regulatory mechanism. Journal of Proteomics 83, 130-43. http://www.sciencedirect.com/science/article/pii/S187439191300167X

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